{"id":"https://openalex.org/W2126877057","doi":"https://doi.org/10.1093/bioinformatics/btt393","title":"Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming","display_name":"Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming","publication_year":2013,"publication_date":"2013-07-12","ids":{"openalex":"https://openalex.org/W2126877057","doi":"https://doi.org/10.1093/bioinformatics/btt393","mag":"2126877057","pmid":"https://pubmed.ncbi.nlm.nih.gov/23853063"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt393","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/18/2320/17128272/btt393.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/18/2320/17128272/btt393.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067131511","display_name":"Carito Guzio\u0142owski","orcid":"https://orcid.org/0000-0001-5192-0745"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["DE","FR","GB"],"is_corresponding":true,"raw_author_name":"Carito Guziolowski","raw_affiliation_strings":["1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I176453806","https://openalex.org/I100445878","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040731843","display_name":"Santiago Videla","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Santiago Videla","raw_affiliation_strings":["1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I176453806","https://openalex.org/I100445878","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016886168","display_name":"Federica Eduati","orcid":"https://orcid.org/0000-0002-7822-3867"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Federica Eduati","raw_affiliation_strings":["1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I176453806","https://openalex.org/I100445878","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012126355","display_name":"Sven Thiele","orcid":"https://orcid.org/0000-0002-5812-6963"},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Sven Thiele","raw_affiliation_strings":["1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I176453806","https://openalex.org/I100445878","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026372984","display_name":"Thomas Cokelaer","orcid":"https://orcid.org/0000-0001-6286-1138"},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Thomas Cokelaer","raw_affiliation_strings":["1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I176453806","https://openalex.org/I100445878","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063755415","display_name":"Anne Siegel","orcid":"https://orcid.org/0000-0001-6542-1568"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Anne Siegel","raw_affiliation_strings":["1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I176453806","https://openalex.org/I100445878","https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005499510","display_name":"Julio S\u00e1ez-Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-8552-8976"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Julio Saez-Rodriguez","raw_affiliation_strings":["1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 \u00c9cole Centrale de Nantes, IRCCyN UMR CNRS 6597, 44321, Nantes, France, 2CNRS, UMR 6074 IRISA, Campus de Beaulieu, 35042 Rennes, France, 3INRIA, Dyliss project, Campus de Beaulieu, 35042 Rennes, France, 4Universit\u00e4t Potsdam, Institut f\u00fcr Informatik, D-14482 Potsdam, Germany and 5European Molecular Biology Laboratory, EuropeanBioinformatics Institute, Hinxton CB10 1SD, UK","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I176453806","https://openalex.org/I100445878","https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5067131511"],"corresponding_institution_ids":["https://openalex.org/I100445878","https://openalex.org/I1294671590","https://openalex.org/I1303153112","https://openalex.org/I1326498283","https://openalex.org/I176453806","https://openalex.org/I2802519937"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":14.3331,"has_fulltext":true,"cited_by_count":76,"citation_normalized_percentile":{"value":0.98847772,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"29","issue":"18","first_page":"2320","last_page":"2326"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11010","display_name":"Logic, Reasoning, and Knowledge","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9628000259399414,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.772645115852356},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7289499640464783},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6114410758018494},{"id":"https://openalex.org/keywords/inductive-logic-programming","display_name":"Inductive logic programming","score":0.5020532608032227},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49195024371147156},{"id":"https://openalex.org/keywords/answer-set-programming","display_name":"Answer set programming","score":0.4915390908718109},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.456204891204834},{"id":"https://openalex.org/keywords/genetic-programming","display_name":"Genetic programming","score":0.4298579692840576},{"id":"https://openalex.org/keywords/logic-programming","display_name":"Logic programming","score":0.4277932941913605},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39722347259521484},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21805769205093384}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.772645115852356},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7289499640464783},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6114410758018494},{"id":"https://openalex.org/C2779382394","wikidata":"https://www.wikidata.org/wiki/Q1464197","display_name":"Inductive logic programming","level":2,"score":0.5020532608032227},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49195024371147156},{"id":"https://openalex.org/C182620335","wikidata":"https://www.wikidata.org/wiki/Q2852531","display_name":"Answer set programming","level":3,"score":0.4915390908718109},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.456204891204834},{"id":"https://openalex.org/C110332635","wikidata":"https://www.wikidata.org/wiki/Q629498","display_name":"Genetic programming","level":2,"score":0.4298579692840576},{"id":"https://openalex.org/C128838566","wikidata":"https://www.wikidata.org/wiki/Q275603","display_name":"Logic programming","level":2,"score":0.4277932941913605},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39722347259521484},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21805769205093384}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1093/bioinformatics/btt393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt393","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/18/2320/17128272/btt393.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23853063","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23853063","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:877853","is_oa":false,"landing_page_url":"http://library.tue.nl/csp/dare/LinkToRepository.csp?recordnumber=877853","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1367-4803","raw_type":"Article / Letter to the editor"},{"id":"pmh:oai:HAL:hal-00853704v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-00853704","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2013, 29 (18), pp.2320-2326. &#x27E8;10.1093/bioinformatics/btt393&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2745042","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3753570","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:kobv.de-opus4-uni-potsdam:34734","is_oa":false,"landing_page_url":"https://publishup.uni-potsdam.de/frontdoor/index/index/docId/34734","pdf_url":null,"source":{"id":"https://openalex.org/S4306400594","display_name":"publish.UP (University of Potsdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176453806","host_organization_name":"University of Potsdam","host_organization_lineage":["https://openalex.org/I176453806"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:library.tue.nl:871376","is_oa":false,"landing_page_url":"http://repository.tue.nl/871376","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1367-4803","raw_type":"Article / Letter to the editor"},{"id":"pmh:oai:library.tue.nl:877853","is_oa":false,"landing_page_url":"http://repository.tue.nl/877853","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1367-4803","raw_type":"Article / Letter to the editor"},{"id":"pmh:oai:pubmedcentral.nih.gov:3753570","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3753570","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt393","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/18/2320/17128272/btt393.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6851345361","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320338366","display_name":"FP7 Food, Agriculture and Fisheries, Biotechnology","ror":null},{"id":"https://openalex.org/F4320338463","display_name":"CHIST-ERA","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2126877057.pdf","grobid_xml":"https://content.openalex.org/works/W2126877057.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1482498688","https://openalex.org/W1555419827","https://openalex.org/W1606891084","https://openalex.org/W1807981783","https://openalex.org/W1817519191","https://openalex.org/W1986177561","https://openalex.org/W1990087549","https://openalex.org/W2003939846","https://openalex.org/W2015401980","https://openalex.org/W2019303311","https://openalex.org/W2059238994","https://openalex.org/W2069728939","https://openalex.org/W2071784417","https://openalex.org/W2073903631","https://openalex.org/W2091251097","https://openalex.org/W2095433609","https://openalex.org/W2117191960","https://openalex.org/W2129935828","https://openalex.org/W2139922246","https://openalex.org/W2143877670","https://openalex.org/W2151290962","https://openalex.org/W2161427213","https://openalex.org/W2161960556","https://openalex.org/W2167334954","https://openalex.org/W2167437179","https://openalex.org/W2177180613","https://openalex.org/W2950638330","https://openalex.org/W3122241128","https://openalex.org/W4211177236","https://openalex.org/W6628661260","https://openalex.org/W6638689380"],"related_works":["https://openalex.org/W1511336005","https://openalex.org/W2806291252","https://openalex.org/W1903938722","https://openalex.org/W1556072255","https://openalex.org/W2589498389","https://openalex.org/W2769262119","https://openalex.org/W1875972884","https://openalex.org/W34858115","https://openalex.org/W2141565127","https://openalex.org/W2964612035"],"abstract_inverted_index":{"santiago.videla@irisa.fr.":[0]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
