{"id":"https://openalex.org/W2132563331","doi":"https://doi.org/10.1093/bioinformatics/btt304","title":"EpiCombFlu: exploring known influenza epitopes and their combination to design a universal influenza vaccine","display_name":"EpiCombFlu: exploring known influenza epitopes and their combination to design a universal influenza vaccine","publication_year":2013,"publication_date":"2013-05-28","ids":{"openalex":"https://openalex.org/W2132563331","doi":"https://doi.org/10.1093/bioinformatics/btt304","mag":"2132563331"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt304","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/15/1904/48887025/bioinformatics_29_15_1904.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/15/1904/48887025/bioinformatics_29_15_1904.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078539372","display_name":"Varun Jaiswal","orcid":"https://orcid.org/0000-0001-8068-0672"},"institutions":[{"id":"https://openalex.org/I153954893","display_name":"Jaypee University of Information Technology","ror":"https://ror.org/00hshrf16","country_code":"IN","type":"education","lineage":["https://openalex.org/I153954893"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Varun Jaiswal","raw_affiliation_strings":["Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173234, India","Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh-173234, INDIA"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173234, India","institution_ids":["https://openalex.org/I153954893"]},{"raw_affiliation_string":"Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh-173234, INDIA","institution_ids":["https://openalex.org/I153954893"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082982828","display_name":"Sree K. Chanumolu","orcid":null},"institutions":[{"id":"https://openalex.org/I153954893","display_name":"Jaypee University of Information Technology","ror":"https://ror.org/00hshrf16","country_code":"IN","type":"education","lineage":["https://openalex.org/I153954893"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sree K. Chanumolu","raw_affiliation_strings":["Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173234, India","Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh-173234, INDIA"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173234, India","institution_ids":["https://openalex.org/I153954893"]},{"raw_affiliation_string":"Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh-173234, INDIA","institution_ids":["https://openalex.org/I153954893"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029747941","display_name":"Pankaj Sharma","orcid":"https://orcid.org/0000-0002-9130-9235"},"institutions":[{"id":"https://openalex.org/I153954893","display_name":"Jaypee University of Information Technology","ror":"https://ror.org/00hshrf16","country_code":"IN","type":"education","lineage":["https://openalex.org/I153954893"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Pankaj Sharma","raw_affiliation_strings":["Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173234, India","Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh-173234, INDIA"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173234, India","institution_ids":["https://openalex.org/I153954893"]},{"raw_affiliation_string":"Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh-173234, INDIA","institution_ids":["https://openalex.org/I153954893"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101889702","display_name":"Rajinder Singh Chauhan","orcid":"https://orcid.org/0000-0003-1644-4653"},"institutions":[{"id":"https://openalex.org/I153954893","display_name":"Jaypee University of Information Technology","ror":"https://ror.org/00hshrf16","country_code":"IN","type":"education","lineage":["https://openalex.org/I153954893"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rajinder S. Chauhan","raw_affiliation_strings":["Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173234, India","Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh-173234, INDIA"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173234, India","institution_ids":["https://openalex.org/I153954893"]},{"raw_affiliation_string":"Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh-173234, INDIA","institution_ids":["https://openalex.org/I153954893"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024247758","display_name":"Chittaranjan Rout","orcid":"https://orcid.org/0000-0001-6777-0446"},"institutions":[{"id":"https://openalex.org/I153954893","display_name":"Jaypee University of Information Technology","ror":"https://ror.org/00hshrf16","country_code":"IN","type":"education","lineage":["https://openalex.org/I153954893"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Chittaranjan Rout","raw_affiliation_strings":["Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173234, India","Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh-173234, INDIA"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173234, India","institution_ids":["https://openalex.org/I153954893"]},{"raw_affiliation_string":"Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh-173234, INDIA","institution_ids":["https://openalex.org/I153954893"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5078539372"],"corresponding_institution_ids":["https://openalex.org/I153954893"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1994,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.61382946,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"29","issue":"15","first_page":"1904","last_page":"1907"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8307608366012573},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.7138338685035706},{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.6277649402618408},{"id":"https://openalex.org/keywords/vaccination","display_name":"Vaccination","score":0.5878356695175171},{"id":"https://openalex.org/keywords/influenza-vaccine","display_name":"Influenza vaccine","score":0.5815110206604004},{"id":"https://openalex.org/keywords/antigenic-drift","display_name":"Antigenic drift","score":0.5158159136772156},{"id":"https://openalex.org/keywords/antigenic-shift","display_name":"Antigenic shift","score":0.46796756982803345},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4613094627857208},{"id":"https://openalex.org/keywords/seasonal-influenza","display_name":"Seasonal influenza","score":0.4157825708389282},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41331204771995544},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.4105174243450165},{"id":"https://openalex.org/keywords/influenza-a-virus","display_name":"Influenza A virus","score":0.40721023082733154},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.29971593618392944},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2726461589336395},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.2512538731098175},{"id":"https://openalex.org/keywords/environmental-health","display_name":"Environmental health","score":0.15010276436805725},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.14299613237380981},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.08220058679580688}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8307608366012573},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.7138338685035706},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.6277649402618408},{"id":"https://openalex.org/C22070199","wikidata":"https://www.wikidata.org/wiki/Q192995","display_name":"Vaccination","level":2,"score":0.5878356695175171},{"id":"https://openalex.org/C2780689484","wikidata":"https://www.wikidata.org/wiki/Q383260","display_name":"Influenza vaccine","level":3,"score":0.5815110206604004},{"id":"https://openalex.org/C7842527","wikidata":"https://www.wikidata.org/wiki/Q575258","display_name":"Antigenic drift","level":4,"score":0.5158159136772156},{"id":"https://openalex.org/C86282344","wikidata":"https://www.wikidata.org/wiki/Q575314","display_name":"Antigenic shift","level":5,"score":0.46796756982803345},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4613094627857208},{"id":"https://openalex.org/C3018751465","wikidata":"https://www.wikidata.org/wiki/Q4120645","display_name":"Seasonal influenza","level":5,"score":0.4157825708389282},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41331204771995544},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.4105174243450165},{"id":"https://openalex.org/C2777546802","wikidata":"https://www.wikidata.org/wiki/Q834390","display_name":"Influenza A virus","level":3,"score":0.40721023082733154},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.29971593618392944},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2726461589336395},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.2512538731098175},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.15010276436805725},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.14299613237380981},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.08220058679580688},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/btt304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt304","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/15/1904/48887025/bioinformatics_29_15_1904.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt304","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/15/1904/48887025/bioinformatics_29_15_1904.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.8799999952316284}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132563331.pdf","grobid_xml":"https://content.openalex.org/works/W2132563331.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W179283128","https://openalex.org/W1976372006","https://openalex.org/W1980581206","https://openalex.org/W1985152588","https://openalex.org/W2024196850","https://openalex.org/W2038790394","https://openalex.org/W2069548391","https://openalex.org/W2072706651","https://openalex.org/W2083087192","https://openalex.org/W2084465880","https://openalex.org/W2092849346","https://openalex.org/W2105225614","https://openalex.org/W2134182833","https://openalex.org/W2137319366","https://openalex.org/W6607256956"],"related_works":["https://openalex.org/W3166071607","https://openalex.org/W2406460005","https://openalex.org/W4252162997","https://openalex.org/W1992161679","https://openalex.org/W51717375","https://openalex.org/W2107413158","https://openalex.org/W2170197010","https://openalex.org/W2157229282","https://openalex.org/W2921220897","https://openalex.org/W2029973475"],"abstract_inverted_index":{"Abstract":[0],"Motivation:":[1],"Influenza":[2,23],"is":[3,13,156],"responsible":[4],"for":[5,61,117,127],"half":[6],"a":[7,59,62,71,83,104],"million":[8],"deaths":[9],"annually,":[10],"and":[11,34,48,52,96,114,124,147],"vaccination":[12],"the":[14,77,87],"best":[15],"preventive":[16],"measure":[17],"against":[18,41],"this":[19],"pervasive":[20],"health":[21],"problem.":[22],"vaccines":[24],"developed":[25],"from":[26,45],"surveillance":[27],"data":[28,91,166],"of":[29,55,73,141],"each":[30],"season":[31],"are":[32,36,167],"strain-specific,":[33],"therefore,":[35],"unable":[37],"to":[38,79,102,137],"provide":[39],"protection":[40],"pandemic":[42],"strains":[43],"arising":[44],"antigenic":[46],"shift":[47],"drift.":[49],"Seasonal":[50],"epidemics":[51],"occasional":[53],"pandemics":[54],"influenza":[56,64,112],"have":[57,68],"created":[58],"need":[60],"universal":[63],"vaccine":[65,128],"(UIV).":[66],"Researchers":[67],"shown":[69],"that":[70,143],"combination":[72,140],"conserved":[74],"epitopes":[75,95,113,142],"has":[76],"potential":[78,150],"be":[80,145],"used":[81,101],"as":[82,149],"UIV.":[84,151],"Result:":[85],"In":[86],"present":[88],"work,":[89],"available":[90,158,168],"on":[92],"strains,":[93,121],"proteins,":[94],"their":[97,115],"associated":[98],"information":[99],"were":[100],"develop":[103],"Web":[105,154],"resource,":[106],"\u2018EpiCombFlu\u2019,":[107],"which":[108],"can":[109],"explore":[110],"different":[111,120],"combinations":[116],"conservation":[118],"among":[119],"population":[122],"coverage":[123],"immune":[125],"response":[126],"design.":[129],"Forward":[130],"selection":[131],"algorithm":[132],"was":[133],"implemented":[134],"in":[135],"EpiCombFlu":[136],"select":[138],"optimum":[139],"may":[144],"expressed":[146],"evaluated":[148],"Availability:":[152],"The":[153],"resource":[155],"freely":[157],"at":[159,169],"http://117.211.115.67/influenza/home.html.":[160],"Contact:":[161],"chittaranjan.rout@juit.ac.in":[162],"Supplementary":[163,165],"information:":[164],"Bioinformatics":[170],"online.":[171]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
