{"id":"https://openalex.org/W2144227416","doi":"https://doi.org/10.1093/bioinformatics/btt097","title":"An improved constraint filtering technique for inferring hidden states and parameters of a biological model","display_name":"An improved constraint filtering technique for inferring hidden states and parameters of a biological model","publication_year":2013,"publication_date":"2013-02-22","ids":{"openalex":"https://openalex.org/W2144227416","doi":"https://doi.org/10.1093/bioinformatics/btt097","mag":"2144227416","pmid":"https://pubmed.ncbi.nlm.nih.gov/23434837"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt097","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt097","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021710415","display_name":"Syed Murtuza Baker","orcid":"https://orcid.org/0000-0002-6633-333X"},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Syed Murtuza Baker","raw_affiliation_strings":["1 Systems Biology Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany, 2Institute of Computer Science, Martin Luther University, 06120 Halle-Wittenberg, Germany and 3Plant Bioinformatics Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany"],"affiliations":[{"raw_affiliation_string":"1 Systems Biology Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany, 2Institute of Computer Science, Martin Luther University, 06120 Halle-Wittenberg, Germany and 3Plant Bioinformatics Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023543685","display_name":"C. Hart Poskar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"C. Hart Poskar","raw_affiliation_strings":["1 Systems Biology Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany, 2Institute of Computer Science, Martin Luther University, 06120 Halle-Wittenberg, Germany and 3Plant Bioinformatics Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany"],"affiliations":[{"raw_affiliation_string":"1 Systems Biology Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany, 2Institute of Computer Science, Martin Luther University, 06120 Halle-Wittenberg, Germany and 3Plant Bioinformatics Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003441276","display_name":"Falk Schreiber","orcid":"https://orcid.org/0000-0002-9307-3254"},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Falk Schreiber","raw_affiliation_strings":["1 Systems Biology Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany, 2Institute of Computer Science, Martin Luther University, 06120 Halle-Wittenberg, Germany and 3Plant Bioinformatics Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany"],"affiliations":[{"raw_affiliation_string":"1 Systems Biology Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany, 2Institute of Computer Science, Martin Luther University, 06120 Halle-Wittenberg, Germany and 3Plant Bioinformatics Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068201400","display_name":"Bj\u00f6rn H. Junker","orcid":"https://orcid.org/0000-0001-5818-9764"},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn H. Junker","raw_affiliation_strings":["1 Systems Biology Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany, 2Institute of Computer Science, Martin Luther University, 06120 Halle-Wittenberg, Germany and 3Plant Bioinformatics Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany"],"affiliations":[{"raw_affiliation_string":"1 Systems Biology Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany, 2Institute of Computer Science, Martin Luther University, 06120 Halle-Wittenberg, Germany and 3Plant Bioinformatics Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5021710415"],"corresponding_institution_ids":["https://openalex.org/I4210127902"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.5248,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.90445388,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"29","issue":"8","first_page":"1052","last_page":"1059"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10876","display_name":"Fault Detection and Control Systems","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10876","display_name":"Fault Detection and Control Systems","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10711","display_name":"Target Tracking and Data Fusion in Sensor Networks","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12205","display_name":"Time Series Analysis and Forecasting","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.7369914054870605},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6287456154823303},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5192034840583801},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4334673285484314},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3269883990287781},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2579769492149353}],"concepts":[{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.7369914054870605},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6287456154823303},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5192034840583801},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4334673285484314},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3269883990287781},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2579769492149353},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006019","descriptor_name":"Glycolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006019","descriptor_name":"Glycolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006019","descriptor_name":"Glycolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017711","descriptor_name":"Nonlinear Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017711","descriptor_name":"Nonlinear Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017711","descriptor_name":"Nonlinear Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btt097","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt097","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23434837","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23434837","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/fddd790f-4ec8-4fb9-82cb-c4b4bc4b9232","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/fddd790f-4ec8-4fb9-82cb-c4b4bc4b9232","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Baker, S M, Poskar, C H, Schreiber, F & Junker, B H 2013, 'An improved constraint filtering technique for inferring hidden states and parameters of a biological model', Bioinformatics, vol. 29, no. 8, pp. 1052\u20131059. https://doi.org/10.1093/bioinformatics/btt097","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/fddd790f-4ec8-4fb9-82cb-c4b4bc4b9232","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/an-improved-constraint-filtering-technique-for-inferring-hidden-states-and-parameters-of-a-biological-model(fddd790f-4ec8-4fb9-82cb-c4b4bc4b9232).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Baker, S M, Poskar, C H, Schreiber, F & Junker, B H 2013, 'An improved constraint filtering technique for inferring hidden states and parameters of a biological model', Bioinformatics, vol. 29, no. 8, pp. 1052\u20131059. https://doi.org/10.1093/bioinformatics/btt097","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1480692184","https://openalex.org/W1483307070","https://openalex.org/W1520710862","https://openalex.org/W1576369122","https://openalex.org/W1968461883","https://openalex.org/W1982258483","https://openalex.org/W1986294597","https://openalex.org/W2017551827","https://openalex.org/W2020934227","https://openalex.org/W2024060531","https://openalex.org/W2035279803","https://openalex.org/W2038881969","https://openalex.org/W2044278781","https://openalex.org/W2063389953","https://openalex.org/W2076092328","https://openalex.org/W2080973322","https://openalex.org/W2103068143","https://openalex.org/W2104810358","https://openalex.org/W2105934661","https://openalex.org/W2107802551","https://openalex.org/W2112794562","https://openalex.org/W2123487311","https://openalex.org/W2126423185","https://openalex.org/W2128292224","https://openalex.org/W2142144425","https://openalex.org/W2144323650","https://openalex.org/W2144401864","https://openalex.org/W2144923636","https://openalex.org/W2147958644","https://openalex.org/W2150821867","https://openalex.org/W2151729750","https://openalex.org/W2153956297","https://openalex.org/W2156435365","https://openalex.org/W2165603655","https://openalex.org/W2166303358","https://openalex.org/W2168517434","https://openalex.org/W2904454889","https://openalex.org/W4238726034","https://openalex.org/W4285719527","https://openalex.org/W4294732263","https://openalex.org/W4300639284","https://openalex.org/W6676285704","https://openalex.org/W6681551571"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2033914206","https://openalex.org/W2042327336"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
