{"id":"https://openalex.org/W2122532582","doi":"https://doi.org/10.1093/bioinformatics/btt085","title":"Nozzle: a report generation toolkit for data analysis pipelines","display_name":"Nozzle: a report generation toolkit for data analysis pipelines","publication_year":2013,"publication_date":"2013-02-17","ids":{"openalex":"https://openalex.org/W2122532582","doi":"https://doi.org/10.1093/bioinformatics/btt085","mag":"2122532582","pmid":"https://pubmed.ncbi.nlm.nih.gov/23419376"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt085","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/8/1089/48899147/bioinformatics_29_8_1089.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/8/1089/48899147/bioinformatics_29_8_1089.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066335313","display_name":"Nils Gehlenborg","orcid":"https://orcid.org/0000-0003-0327-8297"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nils Gehlenborg","raw_affiliation_strings":["1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076052555","display_name":"Michael S. Noble","orcid":"https://orcid.org/0000-0002-6704-1793"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael S. Noble","raw_affiliation_strings":["1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001392592","display_name":"Gad Getz","orcid":"https://orcid.org/0000-0002-0936-0753"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gad Getz","raw_affiliation_strings":["1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104109623","display_name":"Lynda Chin","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lynda Chin","raw_affiliation_strings":["1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022028438","display_name":"Peter J. Park","orcid":"https://orcid.org/0000-0001-9378-960X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter J. Park","raw_affiliation_strings":["1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA","institution_ids":["https://openalex.org/I107606265","https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5066335313"],"corresponding_institution_ids":["https://openalex.org/I107606265","https://openalex.org/I136199984"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.8099,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.96234966,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"29","issue":"8","first_page":"1089","last_page":"1091"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.6175894141197205},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5937111973762512},{"id":"https://openalex.org/keywords/nozzle","display_name":"Nozzle","score":0.5879860520362854},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43362075090408325},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2501639127731323},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1801145374774933},{"id":"https://openalex.org/keywords/aerospace-engineering","display_name":"Aerospace engineering","score":0.13260293006896973},{"id":"https://openalex.org/keywords/mechanical-engineering","display_name":"Mechanical engineering","score":0.11052632331848145}],"concepts":[{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.6175894141197205},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5937111973762512},{"id":"https://openalex.org/C56200935","wikidata":"https://www.wikidata.org/wiki/Q250840","display_name":"Nozzle","level":2,"score":0.5879860520362854},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43362075090408325},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2501639127731323},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1801145374774933},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.13260293006896973},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.11052632331848145}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt085","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/8/1089/48899147/bioinformatics_29_8_1089.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23419376","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23419376","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2965023","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3624805","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt085","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/8/1089/48899147/bioinformatics_29_8_1089.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5699999928474426}],"awards":[],"funders":[{"id":"https://openalex.org/F4320314070","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2122532582.pdf","grobid_xml":"https://content.openalex.org/works/W2122532582.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1520411860","https://openalex.org/W1977859620","https://openalex.org/W2002134496","https://openalex.org/W2136482257","https://openalex.org/W2137653635","https://openalex.org/W2157852151","https://openalex.org/W6631153645"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2360206036","https://openalex.org/W2086347189","https://openalex.org/W2377901036","https://openalex.org/W4327773545","https://openalex.org/W2884606178","https://openalex.org/W3179160715","https://openalex.org/W761656675","https://openalex.org/W3011610445","https://openalex.org/W2804496044"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
