{"id":"https://openalex.org/W2140522686","doi":"https://doi.org/10.1093/bioinformatics/btt038","title":"SwarmDock: a server for flexible protein\u2013protein docking","display_name":"SwarmDock: a server for flexible protein\u2013protein docking","publication_year":2013,"publication_date":"2013-01-23","ids":{"openalex":"https://openalex.org/W2140522686","doi":"https://doi.org/10.1093/bioinformatics/btt038","mag":"2140522686","pmid":"https://pubmed.ncbi.nlm.nih.gov/23343604"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt038","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/807/48901194/bioinformatics_29_6_807.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/807/48901194/bioinformatics_29_6_807.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003667131","display_name":"Mieczyslaw Torchala","orcid":null},"institutions":[{"id":"https://openalex.org/I2801316944","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67","country_code":"GB","type":"funder","lineage":["https://openalex.org/I2801316944"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","GB"],"is_corresponding":true,"raw_author_name":"Mieczyslaw Torchala","raw_affiliation_strings":["1 Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London WC2A 3LY, UK and 2Joint BSC-IRB Research Program in Computational Biology, Life Science Department, Barcelona Supercomputing Center, 08034 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London WC2A 3LY, UK and 2Joint BSC-IRB Research Program in Computational Biology, Life Science Department, Barcelona Supercomputing Center, 08034 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2801316944","https://openalex.org/I2799803557"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060836019","display_name":"Iain H. Moal","orcid":"https://orcid.org/0000-0002-4960-5487"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I2801316944","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67","country_code":"GB","type":"funder","lineage":["https://openalex.org/I2801316944"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Iain H. Moal","raw_affiliation_strings":["1 Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London WC2A 3LY, UK and 2Joint BSC-IRB Research Program in Computational Biology, Life Science Department, Barcelona Supercomputing Center, 08034 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London WC2A 3LY, UK and 2Joint BSC-IRB Research Program in Computational Biology, Life Science Department, Barcelona Supercomputing Center, 08034 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2801316944","https://openalex.org/I2799803557"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015204242","display_name":"Rapha\u00ebl A. G. Chaleil","orcid":"https://orcid.org/0000-0003-2759-2088"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I2801316944","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67","country_code":"GB","type":"funder","lineage":["https://openalex.org/I2801316944"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Raphael A. G. Chaleil","raw_affiliation_strings":["1 Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London WC2A 3LY, UK and 2Joint BSC-IRB Research Program in Computational Biology, Life Science Department, Barcelona Supercomputing Center, 08034 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London WC2A 3LY, UK and 2Joint BSC-IRB Research Program in Computational Biology, Life Science Department, Barcelona Supercomputing Center, 08034 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2801316944","https://openalex.org/I2799803557"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021117369","display_name":"Juan Fern\u00e1ndez\u2010Recio","orcid":"https://orcid.org/0000-0002-3986-7686"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I2801316944","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67","country_code":"GB","type":"funder","lineage":["https://openalex.org/I2801316944"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Juan Fernandez-Recio","raw_affiliation_strings":["1 Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London WC2A 3LY, UK and 2Joint BSC-IRB Research Program in Computational Biology, Life Science Department, Barcelona Supercomputing Center, 08034 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London WC2A 3LY, UK and 2Joint BSC-IRB Research Program in Computational Biology, Life Science Department, Barcelona Supercomputing Center, 08034 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2801316944","https://openalex.org/I2799803557"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032952249","display_name":"Paul A. Bates","orcid":"https://orcid.org/0000-0003-0621-0925"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I2801316944","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67","country_code":"GB","type":"funder","lineage":["https://openalex.org/I2801316944"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Paul A. Bates","raw_affiliation_strings":["1 Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London WC2A 3LY, UK and 2Joint BSC-IRB Research Program in Computational Biology, Life Science Department, Barcelona Supercomputing Center, 08034 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, London WC2A 3LY, UK and 2Joint BSC-IRB Research Program in Computational Biology, Life Science Department, Barcelona Supercomputing Center, 08034 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2801316944","https://openalex.org/I2799803557"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5003667131"],"corresponding_institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I2801316944","https://openalex.org/I9617848"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":23.3007,"has_fulltext":false,"cited_by_count":289,"citation_normalized_percentile":{"value":0.99693116,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"29","issue":"6","first_page":"807","last_page":"809"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9686999917030334,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8597094416618347},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6999240517616272},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6660028696060181},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6536675095558167},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.6419063210487366},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.5850661993026733},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33147531747817993},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2534531354904175},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2512296736240387},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22897964715957642},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08009800314903259}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8597094416618347},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6999240517616272},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6660028696060181},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6536675095558167},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.6419063210487366},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.5850661993026733},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33147531747817993},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2534531354904175},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2512296736240387},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22897964715957642},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08009800314903259},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt038","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/807/48901194/bioinformatics_29_6_807.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23343604","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23343604","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.883.2396","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.883.2396","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2013/01/22/bioinformatics.btt038.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt038","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/807/48901194/bioinformatics_29_6_807.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140522686.pdf","grobid_xml":"https://content.openalex.org/works/W2140522686.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1984216675","https://openalex.org/W2005303195","https://openalex.org/W2018410079","https://openalex.org/W2108445825","https://openalex.org/W2112743424","https://openalex.org/W2138913459","https://openalex.org/W2915344963"],"related_works":["https://openalex.org/W2605185882","https://openalex.org/W2238164991","https://openalex.org/W2996908194","https://openalex.org/W2585040066","https://openalex.org/W3187012865","https://openalex.org/W2162380182","https://openalex.org/W3005126098","https://openalex.org/W585106548","https://openalex.org/W3158075195","https://openalex.org/W3038491195"],"abstract_inverted_index":{"Protein-protein":[0],"interactions":[1,15],"are":[2,81],"central":[3],"to":[4],"almost":[5],"all":[6],"biological":[7],"functions,":[8],"and":[9,33,55,64,101],"the":[10,20,35,46,49,90,96,103,107],"atomic":[11],"details":[12],"of":[13,45,60],"such":[14],"can":[16,70],"yield":[17],"insights":[18],"into":[19],"mechanisms":[21],"that":[22,31,80],"underlie":[23],"these":[24],"functions.":[25],"We":[26],"present":[27],"a":[28,57],"web":[29],"server":[30,50,86,110],"wraps":[32],"extends":[34],"SwarmDock":[36],"flexible":[37],"protein-protein":[38],"docking":[39,62,93,99,105],"algorithm.":[40],"After":[41],"uploading":[42],"PDB":[43],"files":[44],"binding":[47],"partners,":[48],"generates":[51],"low":[52],"energy":[53],"conformations":[54],"returns":[56],"ranked":[58],"list":[59],"clustered":[61],"poses":[63],"their":[65],"corresponding":[66],"structures.":[67],"The":[68,85],"user":[69],"perform":[71],"full":[72],"global":[73],"docking,":[74],"or":[75],"focus":[76],"on":[77],"particular":[78],"residues":[79],"implicated":[82],"in":[83,89],"binding.":[84],"is":[87],"validated":[88],"CAPRI":[91],"blind":[92],"experiment,":[94],"against":[95,102],"most":[97],"current":[98],"benchmark,":[100],"ClusPro":[104],"server,":[106],"highest":[108],"performing":[109],"currently":[111],"available.":[112]},"counts_by_year":[{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":22},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":28},{"year":2020,"cited_by_count":34},{"year":2019,"cited_by_count":34},{"year":2018,"cited_by_count":20},{"year":2017,"cited_by_count":34},{"year":2016,"cited_by_count":29},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":8}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}