{"id":"https://openalex.org/W2146095405","doi":"https://doi.org/10.1093/bioinformatics/bts646","title":"13CFLUX2\u2014high-performance software suite for 13C-metabolic flux analysis","display_name":"13CFLUX2\u2014high-performance software suite for 13C-metabolic flux analysis","publication_year":2012,"publication_date":"2012-10-30","ids":{"openalex":"https://openalex.org/W2146095405","doi":"https://doi.org/10.1093/bioinformatics/bts646","mag":"2146095405","pmid":"https://pubmed.ncbi.nlm.nih.gov/23110970"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts646","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts646","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/143/49060330/bioinformatics_29_1_143.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/143/49060330/bioinformatics_29_1_143.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080366910","display_name":"Michael Weitzel","orcid":null},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Michael Weitzel","raw_affiliation_strings":["1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079251665","display_name":"Katharina N\u00f6h","orcid":"https://orcid.org/0000-0002-5407-2275"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Katharina N\u00f6h","raw_affiliation_strings":["1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064150133","display_name":"Tolga Dalman","orcid":null},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tolga Dalman","raw_affiliation_strings":["1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020888009","display_name":"Sebastian Niedenf\u00fchr","orcid":null},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian Niedenf\u00fchr","raw_affiliation_strings":["1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051204735","display_name":"Birgit Stute","orcid":"https://orcid.org/0000-0003-3118-7966"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Birgit Stute","raw_affiliation_strings":["1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018520418","display_name":"Wolfgang Wiechert","orcid":"https://orcid.org/0000-0001-8501-0694"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang Wiechert","raw_affiliation_strings":["1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute of Bio- and Geosciences, IBG-1: Biotechnology and 2JARA High Performance Computing, Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany","institution_ids":["https://openalex.org/I171892758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5080366910"],"corresponding_institution_ids":["https://openalex.org/I171892758"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":8.7401,"has_fulltext":true,"cited_by_count":206,"citation_normalized_percentile":{"value":0.98586582,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"29","issue":"1","first_page":"143","last_page":"145"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.794465184211731},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6751474738121033},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.6569856405258179},{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.6128270626068115},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6005619764328003},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5688141584396362},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5611286163330078},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5310587882995605},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5123511552810669},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.4833337962627411},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.4499661326408386},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3204652667045593},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2965366840362549},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2118625044822693}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.794465184211731},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6751474738121033},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.6569856405258179},{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.6128270626068115},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6005619764328003},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5688141584396362},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5611286163330078},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5310587882995605},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5123511552810669},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.4833337962627411},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.4499661326408386},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3204652667045593},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2965366840362549},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2118625044822693},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bts646","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts646","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/143/49060330/bioinformatics_29_1_143.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23110970","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23110970","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3530911","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3530911","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:juser.fz-juelich.de:133130","is_oa":true,"landing_page_url":"http://juser.fz-juelich.de/search?p=id:%22FZJ-2013-01678%22","pdf_url":null,"source":{"id":"https://openalex.org/S4306401090","display_name":"JuSER (Forschungszentrum J\u00fclich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I171892758","host_organization_name":"Forschungszentrum J\u00fclich","host_organization_lineage":["https://openalex.org/I171892758"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 29(1), 143 - 145 (2013). doi:10.1093/bioinformatics/bts646","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:publications.rwth-aachen.de:217502","is_oa":false,"landing_page_url":"https://publications.rwth-aachen.de/record/217502","pdf_url":null,"source":{"id":"https://openalex.org/S4306401362","display_name":"RWTH Publications (RWTH Aachen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887968799","host_organization_name":"RWTH Aachen University","host_organization_lineage":["https://openalex.org/I887968799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 29(1), 143-145 (2013). doi:10.1093/bioinformatics/bts646","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts646","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts646","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/143/49060330/bioinformatics_29_1_143.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146095405.pdf","grobid_xml":"https://content.openalex.org/works/W2146095405.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1992170087","https://openalex.org/W2007892976","https://openalex.org/W2014323212","https://openalex.org/W2033471108","https://openalex.org/W2037881978","https://openalex.org/W2048295028","https://openalex.org/W2059902696","https://openalex.org/W2086144884","https://openalex.org/W2095246084","https://openalex.org/W2098983518","https://openalex.org/W2099179490","https://openalex.org/W2100398170","https://openalex.org/W2101857987","https://openalex.org/W2144560876","https://openalex.org/W2160079005","https://openalex.org/W3097925195","https://openalex.org/W4388257666"],"related_works":["https://openalex.org/W2033889310","https://openalex.org/W644889988","https://openalex.org/W2341492732","https://openalex.org/W2086577855","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W1575418055","https://openalex.org/W2027422865","https://openalex.org/W1486009489","https://openalex.org/W2188913729"],"abstract_inverted_index":{"13CFLUX2":[0],"is":[1],"implemented":[2],"in":[3],"C++":[4],"(ISO/IEC":[5],"14882":[6],"standard)":[7],"with":[8],"Java":[9],"and":[10,20],"Python":[11],"add-ons":[12],"to":[13],"run":[14],"under":[15],"Linux/Unix.":[16],"A":[17],"demo":[18],"version":[19],"binaries":[21],"are":[22],"available":[23],"at":[24],"www.13cflux.net.":[25]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":19},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":22},{"year":2014,"cited_by_count":22},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}