{"id":"https://openalex.org/W2035946163","doi":"https://doi.org/10.1093/bioinformatics/bts641","title":"MycPermCheck: the <i>Mycobacterium tuberculosis</i> permeability prediction tool for small molecules","display_name":"MycPermCheck: the <i>Mycobacterium tuberculosis</i> permeability prediction tool for small molecules","publication_year":2012,"publication_date":"2012-10-25","ids":{"openalex":"https://openalex.org/W2035946163","doi":"https://doi.org/10.1093/bioinformatics/bts641","mag":"2035946163","pmid":"https://pubmed.ncbi.nlm.nih.gov/23104888"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts641","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts641","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/62/49060292/bioinformatics_29_1_62.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/62/49060292/bioinformatics_29_1_62.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026450463","display_name":"Benjamin Merget","orcid":"https://orcid.org/0000-0002-3882-596X"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Benjamin Merget","raw_affiliation_strings":["1 Institute of Pharmacy and Food Chemistry, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany and 2Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute of Pharmacy and Food Chemistry, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany and 2Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014595948","display_name":"David Zilian","orcid":null},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"David Zilian","raw_affiliation_strings":["1 Institute of Pharmacy and Food Chemistry, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany and 2Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute of Pharmacy and Food Chemistry, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany and 2Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078146941","display_name":"Tobias M\u00fcller","orcid":"https://orcid.org/0000-0003-3035-7070"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias M\u00fcller","raw_affiliation_strings":["1 Institute of Pharmacy and Food Chemistry, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany and 2Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute of Pharmacy and Food Chemistry, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany and 2Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042202366","display_name":"Christoph Sotriffer","orcid":"https://orcid.org/0000-0003-4713-4068"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph A. Sotriffer","raw_affiliation_strings":["1 Institute of Pharmacy and Food Chemistry, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany and 2Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute of Pharmacy and Food Chemistry, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany and 2Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, D-97074 W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5026450463"],"corresponding_institution_ids":["https://openalex.org/I25974101"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.4188,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.88854468,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"29","issue":"1","first_page":"62","last_page":"68"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10274","display_name":"Synthesis and biological activity","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antimycobacterial","display_name":"Antimycobacterial","score":0.8835747241973877},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.7539567947387695},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.6944645643234253},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4987754821777344},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.46386876702308655},{"id":"https://openalex.org/keywords/small-molecule","display_name":"Small molecule","score":0.46267029643058777},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40429452061653137},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.3764353096485138},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.23252791166305542},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21243920922279358},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2035934031009674},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19932624697685242}],"concepts":[{"id":"https://openalex.org/C2779685592","wikidata":"https://www.wikidata.org/wiki/Q2853298","display_name":"Antimycobacterial","level":4,"score":0.8835747241973877},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.7539567947387695},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.6944645643234253},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4987754821777344},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.46386876702308655},{"id":"https://openalex.org/C161624437","wikidata":"https://www.wikidata.org/wiki/Q1988322","display_name":"Small molecule","level":2,"score":0.46267029643058777},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40429452061653137},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.3764353096485138},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.23252791166305542},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21243920922279358},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2035934031009674},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19932624697685242},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002463","descriptor_name":"Cell Membrane Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002463","descriptor_name":"Cell Membrane Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002463","descriptor_name":"Cell Membrane Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts641","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts641","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/62/49060292/bioinformatics_29_1_62.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23104888","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23104888","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts641","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts641","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/62/49060292/bioinformatics_29_1_62.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G3599191701","display_name":null,"funder_award_id":"SFB 630","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2035946163.pdf","grobid_xml":"https://content.openalex.org/works/W2035946163.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W859798839","https://openalex.org/W1908882478","https://openalex.org/W1968956997","https://openalex.org/W1975714531","https://openalex.org/W1978582732","https://openalex.org/W1982542062","https://openalex.org/W1983181721","https://openalex.org/W1983818377","https://openalex.org/W1986106712","https://openalex.org/W1999118725","https://openalex.org/W2007560618","https://openalex.org/W2016172232","https://openalex.org/W2021748110","https://openalex.org/W2034549041","https://openalex.org/W2058813623","https://openalex.org/W2085814996","https://openalex.org/W2088097058","https://openalex.org/W2096541451","https://openalex.org/W2099258581","https://openalex.org/W2099308584","https://openalex.org/W2103556163","https://openalex.org/W2104843251","https://openalex.org/W2107184926","https://openalex.org/W2115544494","https://openalex.org/W2135732933","https://openalex.org/W2140954822","https://openalex.org/W2145126338","https://openalex.org/W2159623101","https://openalex.org/W2159887157","https://openalex.org/W2176516200","https://openalex.org/W2282537990","https://openalex.org/W2409052692","https://openalex.org/W2582743722","https://openalex.org/W4248107770","https://openalex.org/W6674494894","https://openalex.org/W6844734261"],"related_works":["https://openalex.org/W2414560525","https://openalex.org/W2062985631","https://openalex.org/W2500130455","https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W2594726310","https://openalex.org/W2355193834","https://openalex.org/W2907597838","https://openalex.org/W2043558654","https://openalex.org/W2017996710"],"abstract_inverted_index":{"The":[0],"online":[1],"tool":[2],"is":[3],"freely":[4],"accessible":[5],"under":[6],"the":[7],"URL":[8],"http://www.mycpermcheck.aksotriffer.pharmazie.uni-wuerzburg.de":[9]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
