{"id":"https://openalex.org/W2165312548","doi":"https://doi.org/10.1093/bioinformatics/bts613","title":"Reference-independent comparative metagenomics using cross-assembly: crAss","display_name":"Reference-independent comparative metagenomics using cross-assembly: crAss","publication_year":2012,"publication_date":"2012-10-16","ids":{"openalex":"https://openalex.org/W2165312548","doi":"https://doi.org/10.1093/bioinformatics/bts613","mag":"2165312548","pmid":"https://pubmed.ncbi.nlm.nih.gov/23074261"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts613","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts613","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/24/3225/16910159/bts613.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/24/3225/16910159/bts613.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084321697","display_name":"Bas E. Dutilh","orcid":"https://orcid.org/0000-0003-2329-7890"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Bas E. Dutilh","raw_affiliation_strings":["1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA"],"affiliations":[{"raw_affiliation_string":"1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021759346","display_name":"Robert Schmieder","orcid":null},"institutions":[{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Robert Schmieder","raw_affiliation_strings":["1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA"],"affiliations":[{"raw_affiliation_string":"1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111940299","display_name":"Jim Nulton","orcid":null},"institutions":[{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jim Nulton","raw_affiliation_strings":["1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA"],"affiliations":[{"raw_affiliation_string":"1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024053146","display_name":"Ben Felts","orcid":null},"institutions":[{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ben Felts","raw_affiliation_strings":["1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA"],"affiliations":[{"raw_affiliation_string":"1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084207421","display_name":"Peter Salamon","orcid":"https://orcid.org/0000-0002-6274-406X"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Peter Salamon","raw_affiliation_strings":["1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA"],"affiliations":[{"raw_affiliation_string":"1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036802114","display_name":"Robert A. Edwards","orcid":"https://orcid.org/0000-0001-8383-8949"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Robert A. Edwards","raw_affiliation_strings":["1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA"],"affiliations":[{"raw_affiliation_string":"1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071042878","display_name":"John L. Mokili","orcid":"https://orcid.org/0000-0002-3461-580X"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"John L. Mokili","raw_affiliation_strings":["1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA"],"affiliations":[{"raw_affiliation_string":"1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands, 2Department of Computer Science, 3Department of Biology, 4Computational Science Research Center and 5Department of Mathematics, San Diego State University, San Diego, CA 92182, USA and 6Division of Mathematics and Computer Science, Argonne National Laboratory, IL 60439, USA","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5084321697"],"corresponding_institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.5548,"has_fulltext":true,"cited_by_count":64,"citation_normalized_percentile":{"value":0.90103405,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"28","issue":"24","first_page":"3225","last_page":"3231"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9386590123176575},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6049774885177612},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.535666823387146},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.47947511076927185},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.4730483591556549},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4146541655063629},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3987082242965698},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2294873297214508},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2112317681312561}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9386590123176575},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6049774885177612},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.535666823387146},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.47947511076927185},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.4730483591556549},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4146541655063629},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3987082242965698},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2294873297214508},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2112317681312561},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bts613","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts613","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/24/3225/16910159/bts613.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23074261","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23074261","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:osti.gov:1625281","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1625281","pdf_url":"https://www.osti.gov/servlets/purl/1625281","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:europepmc.org:2576866","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3519457","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:repository.ubn.ru.nl:2066/109321","is_oa":false,"landing_page_url":"http://hdl.handle.net/2066/109321","pdf_url":null,"source":{"id":"https://openalex.org/S4306401067","display_name":"Radboud Repository (Radboud University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145872427","host_organization_name":"Radboud University Nijmegen","host_organization_lineage":["https://openalex.org/I145872427"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 28, 24, pp. 3225-31","raw_type":"Article / Letter to editor"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts613","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts613","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/24/3225/16910159/bts613.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2237120788","display_name":"Dimensions: Shedding Light on Viral Dark Matter - Genetic, Taxonomic, and Functional Diversity of Coral Reef Viromes","funder_award_id":"1046413","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4038868185","display_name":null,"funder_award_id":"1046413","funder_id":"https://openalex.org/F4320337400","funder_display_name":"Division of Environmental Biology"},{"id":"https://openalex.org/G5555298697","display_name":null,"funder_award_id":"016.111.075","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G629491556","display_name":null,"funder_award_id":"(NWO)","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G8278258816","display_name":"Collaborative Research:  PHANTOME:  PHage ANnotation TOols and MEthods","funder_award_id":"0850356","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"},{"id":"https://openalex.org/F4320337400","display_name":"Division of Environmental Biology","ror":"https://ror.org/03g87he71"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165312548.pdf","grobid_xml":"https://content.openalex.org/works/W2165312548.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1546639740","https://openalex.org/W1832083778","https://openalex.org/W1964348979","https://openalex.org/W1974860827","https://openalex.org/W1979420181","https://openalex.org/W1989348205","https://openalex.org/W1995614275","https://openalex.org/W1996835973","https://openalex.org/W1997246534","https://openalex.org/W2013544175","https://openalex.org/W2025994725","https://openalex.org/W2039583570","https://openalex.org/W2041867733","https://openalex.org/W2042160423","https://openalex.org/W2044145517","https://openalex.org/W2047242127","https://openalex.org/W2072833821","https://openalex.org/W2079105704","https://openalex.org/W2092779166","https://openalex.org/W2095799021","https://openalex.org/W2109819853","https://openalex.org/W2118903236","https://openalex.org/W2120457919","https://openalex.org/W2120584152","https://openalex.org/W2121180999","https://openalex.org/W2122893222","https://openalex.org/W2123009189","https://openalex.org/W2128114769","https://openalex.org/W2130754716","https://openalex.org/W2141402301","https://openalex.org/W2142678478","https://openalex.org/W2145268834","https://openalex.org/W2145527356","https://openalex.org/W2147416962","https://openalex.org/W2154503441","https://openalex.org/W2160969485","https://openalex.org/W2914037595","https://openalex.org/W3199943451","https://openalex.org/W6800717233"],"related_works":["https://openalex.org/W2210738511","https://openalex.org/W2055448750","https://openalex.org/W2474302342","https://openalex.org/W1910109602","https://openalex.org/W4297131566","https://openalex.org/W2017364432","https://openalex.org/W2080583581","https://openalex.org/W3037682416","https://openalex.org/W3158976456","https://openalex.org/W3134563641"],"abstract_inverted_index":{"Here,":[0],"we":[1],"introduce":[2],"crAss,":[3],"a":[4],"novel":[5],"bioinformatic":[6],"tool":[7],"that":[8],"enables":[9],"fast":[10],"simple":[11],"analysis":[12],"of":[13],"cross-assembly":[14],"files,":[15],"yielding":[16],"distances":[17],"between":[18],"all":[19],"metagenomic":[20],"sample":[21],"pairs":[22],"and":[23],"an":[24],"insightful":[25],"image":[26],"displaying":[27],"the":[28],"similarities.":[29]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
