{"id":"https://openalex.org/W2113168385","doi":"https://doi.org/10.1093/bioinformatics/bts597","title":"KASpOD\u2014a web service for highly specific and explorative oligonucleotide design","display_name":"KASpOD\u2014a web service for highly specific and explorative oligonucleotide design","publication_year":2012,"publication_date":"2012-10-09","ids":{"openalex":"https://openalex.org/W2113168385","doi":"https://doi.org/10.1093/bioinformatics/bts597","mag":"2113168385"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3161/18530753/bts597.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3161/18530753/bts597.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045878836","display_name":"Nicolas Parisot","orcid":"https://orcid.org/0000-0001-5217-8415"},"institutions":[{"id":"https://openalex.org/I198244214","display_name":"Universit\u00e9 Clermont Auvergne","ror":"https://ror.org/01a8ajp46","country_code":"FR","type":"education","lineage":["https://openalex.org/I198244214"]},{"id":"https://openalex.org/I4210122170","display_name":"Laboratoire Microorganismes G\u00e9nome et Environnement","ror":"https://ror.org/020ahr442","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I198244214","https://openalex.org/I4210107625","https://openalex.org/I4210122170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Nicolas Parisot","raw_affiliation_strings":["Laboratoire Microorganismes : G\u00e9nome et Environnement","Clermont Universit\u00e9"],"affiliations":[{"raw_affiliation_string":"Laboratoire Microorganismes : G\u00e9nome et Environnement","institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210122170"]},{"raw_affiliation_string":"Clermont Universit\u00e9","institution_ids":["https://openalex.org/I198244214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058646641","display_name":"J\u00e9r\u00e9mie Denonfoux","orcid":null},"institutions":[{"id":"https://openalex.org/I198244214","display_name":"Universit\u00e9 Clermont Auvergne","ror":"https://ror.org/01a8ajp46","country_code":"FR","type":"education","lineage":["https://openalex.org/I198244214"]},{"id":"https://openalex.org/I4210122170","display_name":"Laboratoire Microorganismes G\u00e9nome et Environnement","ror":"https://ror.org/020ahr442","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I198244214","https://openalex.org/I4210107625","https://openalex.org/I4210122170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J\u00e9r\u00e9mie Denonfoux","raw_affiliation_strings":["Laboratoire Microorganismes : G\u00e9nome et Environnement","Clermont Universit\u00e9"],"affiliations":[{"raw_affiliation_string":"Laboratoire Microorganismes : G\u00e9nome et Environnement","institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210122170"]},{"raw_affiliation_string":"Clermont Universit\u00e9","institution_ids":["https://openalex.org/I198244214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062798672","display_name":"\u00c9ric Dugat\u2010Bony","orcid":"https://orcid.org/0000-0002-5182-0063"},"institutions":[{"id":"https://openalex.org/I198244214","display_name":"Universit\u00e9 Clermont Auvergne","ror":"https://ror.org/01a8ajp46","country_code":"FR","type":"education","lineage":["https://openalex.org/I198244214"]},{"id":"https://openalex.org/I4210122170","display_name":"Laboratoire Microorganismes G\u00e9nome et Environnement","ror":"https://ror.org/020ahr442","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I198244214","https://openalex.org/I4210107625","https://openalex.org/I4210122170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Eric Dugat-Bony","raw_affiliation_strings":["Clermont Universit\u00e9","Laboratoire Microorganismes : G\u00e9nome et Environnement"],"affiliations":[{"raw_affiliation_string":"Clermont Universit\u00e9","institution_ids":["https://openalex.org/I198244214"]},{"raw_affiliation_string":"Laboratoire Microorganismes : G\u00e9nome et Environnement","institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210122170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002447097","display_name":"Pierre Peyret","orcid":"https://orcid.org/0000-0003-3114-0586"},"institutions":[{"id":"https://openalex.org/I198244214","display_name":"Universit\u00e9 Clermont Auvergne","ror":"https://ror.org/01a8ajp46","country_code":"FR","type":"education","lineage":["https://openalex.org/I198244214"]},{"id":"https://openalex.org/I4210122170","display_name":"Laboratoire Microorganismes G\u00e9nome et Environnement","ror":"https://ror.org/020ahr442","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I198244214","https://openalex.org/I4210107625","https://openalex.org/I4210122170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Peyret","raw_affiliation_strings":["Clermont Universit\u00e9","Laboratoire Microorganismes : G\u00e9nome et Environnement"],"affiliations":[{"raw_affiliation_string":"Clermont Universit\u00e9","institution_ids":["https://openalex.org/I198244214"]},{"raw_affiliation_string":"Laboratoire Microorganismes : G\u00e9nome et Environnement","institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210122170"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103112411","display_name":"\u00c9ric Peyretaillade","orcid":"https://orcid.org/0009-0009-0140-2136"},"institutions":[{"id":"https://openalex.org/I198244214","display_name":"Universit\u00e9 Clermont Auvergne","ror":"https://ror.org/01a8ajp46","country_code":"FR","type":"education","lineage":["https://openalex.org/I198244214"]},{"id":"https://openalex.org/I4210122170","display_name":"Laboratoire Microorganismes G\u00e9nome et Environnement","ror":"https://ror.org/020ahr442","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I198244214","https://openalex.org/I4210107625","https://openalex.org/I4210122170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Eric Peyretaillade","raw_affiliation_strings":["Laboratoire Microorganismes : G\u00e9nome et Environnement","Clermont Universit\u00e9"],"affiliations":[{"raw_affiliation_string":"Laboratoire Microorganismes : G\u00e9nome et Environnement","institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210122170"]},{"raw_affiliation_string":"Clermont Universit\u00e9","institution_ids":["https://openalex.org/I198244214"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5045878836"],"corresponding_institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210122170"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3134,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.79570039,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"28","issue":"23","first_page":"3161","last_page":"3162"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5893170833587646},{"id":"https://openalex.org/keywords/oligonucleotide","display_name":"Oligonucleotide","score":0.5607443451881409},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.500943660736084},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4490639567375183},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4486734867095947},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14419910311698914},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.13635584712028503},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11514997482299805},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.10344663262367249}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5893170833587646},{"id":"https://openalex.org/C129312508","wikidata":"https://www.wikidata.org/wiki/Q133686","display_name":"Oligonucleotide","level":3,"score":0.5607443451881409},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.500943660736084},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4490639567375183},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4486734867095947},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14419910311698914},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.13635584712028503},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11514997482299805},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.10344663262367249},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3161/18530753/bts597.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-02651992v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02651992","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3161/18530753/bts597.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113168385.pdf","grobid_xml":"https://content.openalex.org/works/W2113168385.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1491401146","https://openalex.org/W1551672556","https://openalex.org/W1581592599","https://openalex.org/W1977800104","https://openalex.org/W2053654058","https://openalex.org/W2096128575","https://openalex.org/W2119821815","https://openalex.org/W2122082071","https://openalex.org/W2123364539","https://openalex.org/W2132533699","https://openalex.org/W2139828607","https://openalex.org/W2152261619","https://openalex.org/W2154026962","https://openalex.org/W2156125289"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2139596909","https://openalex.org/W2081337217","https://openalex.org/W2263165406","https://openalex.org/W2146354553","https://openalex.org/W2509141950","https://openalex.org/W1967286098","https://openalex.org/W1809074097","https://openalex.org/W1585782846","https://openalex.org/W178471791"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"KASpOD":[2],"is":[3],"a":[4,15],"web":[5],"service":[6],"dedicated":[7],"to":[8],"the":[9],"design":[10],"of":[11],"signature":[12],"sequences":[13],"using":[14],"k-mer\u2013based":[16],"algorithm.":[17],"Such":[18],"highly":[19],"specific":[20],"and":[21],"explorative":[22],"oligonucleotides":[23],"are":[24,42],"then":[25],"suitable":[26],"for":[27],"various":[28],"goals,":[29],"including":[30],"Phylogenetic":[31],"Oligonucleotide":[32],"Arrays.":[33],"Availability:":[34],"http://g2im.u-clermont1.fr/kaspod.":[35],"Contact:":[36],"eric.peyretaillade@udamail.fr":[37],"Supplementary":[38,40],"information:":[39],"data":[41],"available":[43],"at":[44],"Bioinformatics":[45],"online.":[46]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
