{"id":"https://openalex.org/W2117446654","doi":"https://doi.org/10.1093/bioinformatics/bts591","title":"SemMedDB: a PubMed-scale repository of biomedical semantic predications","display_name":"SemMedDB: a PubMed-scale repository of biomedical semantic predications","publication_year":2012,"publication_date":"2012-10-08","ids":{"openalex":"https://openalex.org/W2117446654","doi":"https://doi.org/10.1093/bioinformatics/bts591","mag":"2117446654","pmid":"https://pubmed.ncbi.nlm.nih.gov/23044550"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts591","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts591","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3158/50695211/bioinformatics_28_23_3158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3158/50695211/bioinformatics_28_23_3158.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016571803","display_name":"Halil Kilicoglu","orcid":"https://orcid.org/0000-0003-3987-9393"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Halil Kilicoglu","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA. kilicogluh@mail.nih.gov","Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894 USA"],"affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA. kilicogluh@mail.nih.gov","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894 USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101579606","display_name":"Dongwook Shin","orcid":"https://orcid.org/0000-0002-2900-8634"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dongwook Shin","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA","Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894 USA"],"affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894 USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062552700","display_name":"Marcelo Fiszman","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcelo Fiszman","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA","Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894 USA"],"affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894 USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049096404","display_name":"Graciela Rosemblat","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Graciela Rosemblat","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA","Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894 USA"],"affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894 USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046137010","display_name":"Thomas C. Rindflesch","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas C. Rindflesch","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA","Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894 USA"],"affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894 USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5016571803"],"corresponding_institution_ids":["https://openalex.org/I4210109390"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.6476,"has_fulltext":true,"cited_by_count":387,"citation_normalized_percentile":{"value":0.96965687,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"28","issue":"23","first_page":"3158","last_page":"3160"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8172186613082886},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.6632262468338013},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.5526785850524902},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5228586196899414},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.48793336749076843},{"id":"https://openalex.org/keywords/subject","display_name":"Subject (documents)","score":0.4856949746608734},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39484041929244995},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.30277225375175476},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12408357858657837}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8172186613082886},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.6632262468338013},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.5526785850524902},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5228586196899414},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.48793336749076843},{"id":"https://openalex.org/C2777855551","wikidata":"https://www.wikidata.org/wiki/Q12310021","display_name":"Subject (documents)","level":2,"score":0.4856949746608734},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39484041929244995},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.30277225375175476},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12408357858657837},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts591","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts591","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3158/50695211/bioinformatics_28_23_3158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23044550","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23044550","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2826958","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3509487","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts591","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts591","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3158/50695211/bioinformatics_28_23_3158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.7699999809265137}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117446654.pdf","grobid_xml":"https://content.openalex.org/works/W2117446654.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W76684169","https://openalex.org/W96342457","https://openalex.org/W174568167","https://openalex.org/W1439222551","https://openalex.org/W1483118642","https://openalex.org/W1599615952","https://openalex.org/W1608124137","https://openalex.org/W1614769882","https://openalex.org/W1617905847","https://openalex.org/W1872095891","https://openalex.org/W1999617484","https://openalex.org/W2021366071","https://openalex.org/W2021553181","https://openalex.org/W2094405302","https://openalex.org/W2098201295","https://openalex.org/W2103427999","https://openalex.org/W2109429447","https://openalex.org/W2109507238","https://openalex.org/W2133370410","https://openalex.org/W2143448637","https://openalex.org/W2159583324","https://openalex.org/W2162311237","https://openalex.org/W3005856014","https://openalex.org/W4253430293","https://openalex.org/W4366077702","https://openalex.org/W6603808517","https://openalex.org/W6628459246","https://openalex.org/W6635812994","https://openalex.org/W6636232537","https://openalex.org/W6636514781","https://openalex.org/W6650280191","https://openalex.org/W6655643260","https://openalex.org/W6656049109","https://openalex.org/W6674037582","https://openalex.org/W6675616163"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2003127701","https://openalex.org/W2357241418","https://openalex.org/W4384915113","https://openalex.org/W2563868050","https://openalex.org/W2086064646","https://openalex.org/W2119135658","https://openalex.org/W1001389854","https://openalex.org/W2394915338","https://openalex.org/W2024448651"],"abstract_inverted_index":{"kilicogluh@mail.nih.gov.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":28},{"year":2024,"cited_by_count":46},{"year":2023,"cited_by_count":51},{"year":2022,"cited_by_count":38},{"year":2021,"cited_by_count":36},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":39},{"year":2018,"cited_by_count":31},{"year":2017,"cited_by_count":22},{"year":2016,"cited_by_count":28},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
