{"id":"https://openalex.org/W2103828958","doi":"https://doi.org/10.1093/bioinformatics/bts563","title":"COPE: an accurate <i>k</i>-mer-based pair-end reads connection tool to facilitate genome assembly","display_name":"COPE: an accurate <i>k</i>-mer-based pair-end reads connection tool to facilitate genome assembly","publication_year":2012,"publication_date":"2012-10-08","ids":{"openalex":"https://openalex.org/W2103828958","doi":"https://doi.org/10.1093/bioinformatics/bts563","mag":"2103828958","pmid":"https://pubmed.ncbi.nlm.nih.gov/23044551"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts563","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/2870/671354/bts563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/2870/671354/bts563.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028212836","display_name":"Binghang Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Binghang Liu","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041310127","display_name":"Jianying Yuan","orcid":"https://orcid.org/0000-0001-5357-2385"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Jianying Yuan","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110500992","display_name":"Siu\u2010Ming Yiu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Siu-Ming Yiu","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100330763","display_name":"Zhenyu Li","orcid":"https://orcid.org/0000-0002-6455-2117"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Zhenyu Li","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109860151","display_name":"Yinlong Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Yinlong Xie","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065366225","display_name":"Yanxiang Chen","orcid":"https://orcid.org/0000-0002-1163-7926"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Yanxiang Chen","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029808034","display_name":"Yujian Shi","orcid":"https://orcid.org/0000-0003-1115-8084"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Yujian Shi","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100396851","display_name":"Hao Zhang","orcid":"https://orcid.org/0000-0002-0896-4555"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Hao Zhang","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064592001","display_name":"Yingrui Li","orcid":"https://orcid.org/0000-0001-6630-1277"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Yingrui Li","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077116003","display_name":"Tak\u2010Wah Lam","orcid":"https://orcid.org/0000-0003-4676-8587"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Tak-Wah Lam","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027440970","display_name":"Ruibang Luo","orcid":"https://orcid.org/0000-0001-9711-6533"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Ruibang Luo","raw_affiliation_strings":["1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 HKU-BGI BAL (Bioinformatics Algorithms and Core Technology Research Laboratory), The University of Hong Kong, Hong Kong, 2BGI-Shenzhen, Shenzhen, Guangdong 518083, China and 3Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5028212836"],"corresponding_institution_ids":["https://openalex.org/I4210116924","https://openalex.org/I889458895"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.101,"has_fulltext":false,"cited_by_count":146,"citation_normalized_percentile":{"value":0.96399688,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"28","issue":"22","first_page":"2870","last_page":"2874"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.7921062707901001},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6821846961975098},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.6678694486618042},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.6132057905197144},{"id":"https://openalex.org/keywords/file-transfer-protocol","display_name":"File Transfer Protocol","score":0.6083584427833557},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.5688034296035767},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5314254760742188},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4593532383441925},{"id":"https://openalex.org/keywords/end-to-end-principle","display_name":"End-to-end principle","score":0.4566655457019806},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4460311532020569},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3664703965187073},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28603988885879517},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2859022617340088},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16531264781951904},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10760244727134705},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09263697266578674}],"concepts":[{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.7921062707901001},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6821846961975098},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.6678694486618042},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.6132057905197144},{"id":"https://openalex.org/C169485995","wikidata":"https://www.wikidata.org/wiki/Q42283","display_name":"File Transfer Protocol","level":3,"score":0.6083584427833557},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.5688034296035767},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5314254760742188},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4593532383441925},{"id":"https://openalex.org/C74296488","wikidata":"https://www.wikidata.org/wiki/Q2527392","display_name":"End-to-end principle","level":2,"score":0.4566655457019806},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4460311532020569},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3664703965187073},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28603988885879517},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2859022617340088},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16531264781951904},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10760244727134705},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09263697266578674},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bts563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts563","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/2870/671354/bts563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23044551","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23044551","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:hub.hku.hk:10722/190306","is_oa":false,"landing_page_url":"http://hdl.handle.net/10722/190306","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:hub.hku.hk:10722/251013","is_oa":false,"landing_page_url":"http://hdl.handle.net/10722/251013","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts563","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/2870/671354/bts563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103828958.pdf","grobid_xml":"https://content.openalex.org/works/W2103828958.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1971899779","https://openalex.org/W1997246534","https://openalex.org/W2001725958","https://openalex.org/W2022986961","https://openalex.org/W2087464200","https://openalex.org/W2103962160","https://openalex.org/W2125418992","https://openalex.org/W2132548846","https://openalex.org/W2133956160","https://openalex.org/W2151671981","https://openalex.org/W2157107905","https://openalex.org/W2160770624","https://openalex.org/W2161546116","https://openalex.org/W2162758337"],"related_works":["https://openalex.org/W2127768708","https://openalex.org/W2213265806","https://openalex.org/W2008090296","https://openalex.org/W2166654698","https://openalex.org/W2079322808","https://openalex.org/W4210830088","https://openalex.org/W2923364412","https://openalex.org/W2115501618","https://openalex.org/W2767590279","https://openalex.org/W3090794301"],"abstract_inverted_index":{"twlam@cs.hku.hk":[0],"or":[1],"luoruibang@genomics.org.cn":[2]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":20},{"year":2016,"cited_by_count":20},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":9}],"updated_date":"2026-03-31T07:56:22.981413","created_date":"2016-06-24T00:00:00"}