{"id":"https://openalex.org/W2156607060","doi":"https://doi.org/10.1093/bioinformatics/bts554","title":"An RNA Mapping DataBase for curating RNA structure mapping experiments","display_name":"An RNA Mapping DataBase for curating RNA structure mapping experiments","publication_year":2012,"publication_date":"2012-09-12","ids":{"openalex":"https://openalex.org/W2156607060","doi":"https://doi.org/10.1093/bioinformatics/bts554","mag":"2156607060","pmid":"https://pubmed.ncbi.nlm.nih.gov/22976082"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/3006/48872913/bioinformatics_28_22_3006.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/3006/48872913/bioinformatics_28_22_3006.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048867337","display_name":"Pablo Cordero","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pablo Cordero","raw_affiliation_strings":["1 Department of Biochemistry and Biomedical Informatics Program, Stanford University, Stanford, CA 94305, 2School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, 3Department of Biochemistry and 4Department of Physics, Stanford University, Stanford CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry and Biomedical Informatics Program, Stanford University, Stanford, CA 94305, 2School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, 3Department of Biochemistry and 4Department of Physics, Stanford University, Stanford CA 94305, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037046194","display_name":"Julius B. Lucks","orcid":"https://orcid.org/0000-0002-0619-6505"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julius B. Lucks","raw_affiliation_strings":["1 Department of Biochemistry and Biomedical Informatics Program, Stanford University, Stanford, CA 94305, 2School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, 3Department of Biochemistry and 4Department of Physics, Stanford University, Stanford CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry and Biomedical Informatics Program, Stanford University, Stanford, CA 94305, 2School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, 3Department of Biochemistry and 4Department of Physics, Stanford University, Stanford CA 94305, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071548009","display_name":"Rhiju Das","orcid":"https://orcid.org/0000-0001-7497-0972"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rhiju Das","raw_affiliation_strings":["1 Department of Biochemistry and Biomedical Informatics Program, Stanford University, Stanford, CA 94305, 2School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, 3Department of Biochemistry and 4Department of Physics, Stanford University, Stanford CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry and Biomedical Informatics Program, Stanford University, Stanford, CA 94305, 2School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, 3Department of Biochemistry and 4Department of Physics, Stanford University, Stanford CA 94305, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5048867337"],"corresponding_institution_ids":["https://openalex.org/I205783295","https://openalex.org/I97018004"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.6305,"has_fulltext":true,"cited_by_count":114,"citation_normalized_percentile":{"value":0.93906135,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"28","issue":"22","first_page":"3006","last_page":"3008"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.675570011138916},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5467305779457092},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5451457500457764},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.529870867729187},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4639003276824951},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.45124009251594543},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4490733742713928},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4396209418773651},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4117637574672699},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3476065397262573},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13384968042373657},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.12327829003334045},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1095668375492096},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10852658748626709},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10057312250137329}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.675570011138916},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5467305779457092},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5451457500457764},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.529870867729187},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4639003276824951},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.45124009251594543},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4490733742713928},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4396209418773651},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4117637574672699},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3476065397262573},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13384968042373657},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.12327829003334045},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1095668375492096},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10852658748626709},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10057312250137329},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bts554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/3006/48872913/bioinformatics_28_22_3006.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22976082","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22976082","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.999.378","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.999.378","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2012/09/11/bioinformatics.bts554.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2811227","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3496344","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/3006/48872913/bioinformatics_28_22_3006.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1750481795","display_name":null,"funder_award_id":"R01 GM102519","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7248190179","display_name":null,"funder_award_id":"GM102519","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2156607060.pdf","grobid_xml":"https://content.openalex.org/works/W2156607060.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1966041739","https://openalex.org/W1966303376","https://openalex.org/W1972533328","https://openalex.org/W1976638553","https://openalex.org/W2026181790","https://openalex.org/W2026541379","https://openalex.org/W2031621142","https://openalex.org/W2032136448","https://openalex.org/W2033081981","https://openalex.org/W2036412199","https://openalex.org/W2038598202","https://openalex.org/W2039353471","https://openalex.org/W2046335009","https://openalex.org/W2051183973","https://openalex.org/W2051242197","https://openalex.org/W2053320124","https://openalex.org/W2054613021","https://openalex.org/W2054697783","https://openalex.org/W2055757017","https://openalex.org/W2057805759","https://openalex.org/W2059099058","https://openalex.org/W2071883352","https://openalex.org/W2103666891","https://openalex.org/W2111348995","https://openalex.org/W2118688581","https://openalex.org/W2122220566","https://openalex.org/W2123807596","https://openalex.org/W2127390267","https://openalex.org/W2143407915","https://openalex.org/W2146247729","https://openalex.org/W2147253833","https://openalex.org/W2151596277","https://openalex.org/W2154989302","https://openalex.org/W2156349934","https://openalex.org/W4229743141","https://openalex.org/W4230988890"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W2389214306","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2965083567","https://openalex.org/W4235240664","https://openalex.org/W2077542787","https://openalex.org/W1838576100","https://openalex.org/W2757182831","https://openalex.org/W2071701083"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"Online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
