{"id":"https://openalex.org/W2120292247","doi":"https://doi.org/10.1093/bioinformatics/bts551","title":"ChemBioServer: a web-based pipeline for filtering, clustering and visualization of chemical compounds used in drug discovery","display_name":"ChemBioServer: a web-based pipeline for filtering, clustering and visualization of chemical compounds used in drug discovery","publication_year":2012,"publication_date":"2012-09-08","ids":{"openalex":"https://openalex.org/W2120292247","doi":"https://doi.org/10.1093/bioinformatics/bts551","mag":"2120292247","pmid":"https://pubmed.ncbi.nlm.nih.gov/22962344"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts551","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/3002/48874981/bioinformatics_28_22_3002.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/3002/48874981/bioinformatics_28_22_3002.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084262707","display_name":"Emmanouil Athanasiadis","orcid":"https://orcid.org/0000-0002-2771-5562"},"institutions":[{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Emmanouil Athanasiadis","raw_affiliation_strings":["Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27 Athens, Greece","Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27 Athens, Greece","institution_ids":["https://openalex.org/I206127235"]},{"raw_affiliation_string":"Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27, Athens, Greece","institution_ids":["https://openalex.org/I206127235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062304446","display_name":"Zoe Cournia","orcid":"https://orcid.org/0000-0001-9287-364X"},"institutions":[{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Zoe Cournia","raw_affiliation_strings":["Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27 Athens, Greece","Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27 Athens, Greece","institution_ids":["https://openalex.org/I206127235"]},{"raw_affiliation_string":"Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27, Athens, Greece","institution_ids":["https://openalex.org/I206127235"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058322678","display_name":"George M. Spyrou","orcid":"https://orcid.org/0000-0002-2470-3363"},"institutions":[{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"George Spyrou","raw_affiliation_strings":["Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27 Athens, Greece","Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27 Athens, Greece","institution_ids":["https://openalex.org/I206127235"]},{"raw_affiliation_string":"Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 115 27, Athens, Greece","institution_ids":["https://openalex.org/I206127235"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5084262707"],"corresponding_institution_ids":["https://openalex.org/I206127235"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.4554,"has_fulltext":true,"cited_by_count":64,"citation_normalized_percentile":{"value":0.92861077,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"28","issue":"22","first_page":"3002","last_page":"3003"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6516638398170471},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6210371255874634},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5412774085998535},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5104652643203735},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.49154147505760193},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.47406286001205444},{"id":"https://openalex.org/keywords/chemical-database","display_name":"Chemical database","score":0.43820685148239136},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.4353458285331726},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3055955171585083},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.30182185769081116},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12650901079177856},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.07950708270072937}],"concepts":[{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6516638398170471},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6210371255874634},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5412774085998535},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5104652643203735},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.49154147505760193},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.47406286001205444},{"id":"https://openalex.org/C203394866","wikidata":"https://www.wikidata.org/wiki/Q2881060","display_name":"Chemical database","level":2,"score":0.43820685148239136},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.4353458285331726},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3055955171585083},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.30182185769081116},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12650901079177856},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.07950708270072937},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts551","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/3002/48874981/bioinformatics_28_22_3002.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22962344","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22962344","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts551","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/22/3002/48874981/bioinformatics_28_22_3002.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3848063861","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5124063000","display_name":null,"funder_award_id":"NSRF 2007-2013","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120292247.pdf","grobid_xml":"https://content.openalex.org/works/W2120292247.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1862448690","https://openalex.org/W1885937115","https://openalex.org/W2035753075","https://openalex.org/W2051137913","https://openalex.org/W2051381895","https://openalex.org/W2085398335","https://openalex.org/W2087007556","https://openalex.org/W2099308584","https://openalex.org/W2124983652","https://openalex.org/W2129438079","https://openalex.org/W2135732933","https://openalex.org/W2137799805","https://openalex.org/W2165232124","https://openalex.org/W2167187529","https://openalex.org/W2169678694","https://openalex.org/W2170208703","https://openalex.org/W2176516200"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2121496884","https://openalex.org/W2387910809","https://openalex.org/W2907597838"],"abstract_inverted_index":{"gspyrou@bioacademy.gr":[0]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
