{"id":"https://openalex.org/W2153797177","doi":"https://doi.org/10.1093/bioinformatics/bts422","title":"BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array","display_name":"BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array","publication_year":2012,"publication_date":"2012-07-04","ids":{"openalex":"https://openalex.org/W2153797177","doi":"https://doi.org/10.1093/bioinformatics/bts422","mag":"2153797177","pmid":"https://pubmed.ncbi.nlm.nih.gov/22764159"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts422","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts422","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/20/2705/48873415/bioinformatics_28_20_2705.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/20/2705/48873415/bioinformatics_28_20_2705.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042203294","display_name":"Leslie A\u00efchaoui","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Leslie A\u00efchaoui","raw_affiliation_strings":["1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","MIG - Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome (B\u00e2timent 233 Domaine de Vilvert 78350 Jouy en Josas Cedex - France)"],"affiliations":[{"raw_affiliation_string":"1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I22248866"]},{"raw_affiliation_string":"MIG - Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome (B\u00e2timent 233 Domaine de Vilvert 78350 Jouy en Josas Cedex - France)","institution_ids":["https://openalex.org/I4210159481"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058324631","display_name":"Matthieu Jules","orcid":"https://orcid.org/0000-0003-0817-8949"},"institutions":[{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I3017594750","display_name":"Microbiologie de l\u2019alimentation au service de la sant\u00e9","ror":"https://ror.org/0471cyx86","country_code":"FR","type":"facility","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I3017594750","https://openalex.org/I4210088668","https://openalex.org/I4210099460"]},{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Matthieu Jules","raw_affiliation_strings":["1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","MICALIS - MICrobiologie de l'ALImentation au Service de la Sant\u00e9 (F-78350 JOUY-EN-JOSAS - France)"],"affiliations":[{"raw_affiliation_string":"1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I22248866"]},{"raw_affiliation_string":"MICALIS - MICrobiologie de l'ALImentation au Service de la Sant\u00e9 (F-78350 JOUY-EN-JOSAS - France)","institution_ids":["https://openalex.org/I3017594750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018272907","display_name":"Ludovic Le Chat","orcid":null},"institutions":[{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I3017594750","display_name":"Microbiologie de l\u2019alimentation au service de la sant\u00e9","ror":"https://ror.org/0471cyx86","country_code":"FR","type":"facility","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I3017594750","https://openalex.org/I4210088668","https://openalex.org/I4210099460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ludovic Le Chat","raw_affiliation_strings":["1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","MICALIS - MICrobiologie de l'ALImentation au Service de la Sant\u00e9 (F-78350 JOUY-EN-JOSAS - France)"],"affiliations":[{"raw_affiliation_string":"1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I22248866"]},{"raw_affiliation_string":"MICALIS - MICrobiologie de l'ALImentation au Service de la Sant\u00e9 (F-78350 JOUY-EN-JOSAS - France)","institution_ids":["https://openalex.org/I3017594750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042692067","display_name":"St\u00e9phane Aymerich","orcid":"https://orcid.org/0000-0002-6786-7800"},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I3017594750","display_name":"Microbiologie de l\u2019alimentation au service de la sant\u00e9","ror":"https://ror.org/0471cyx86","country_code":"FR","type":"facility","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I3017594750","https://openalex.org/I4210088668","https://openalex.org/I4210099460"]},{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"St\u00e9phane Aymerich","raw_affiliation_strings":["1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","MICALIS - MICrobiologie de l'ALImentation au Service de la Sant\u00e9 (F-78350 JOUY-EN-JOSAS - France)"],"affiliations":[{"raw_affiliation_string":"1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I22248866"]},{"raw_affiliation_string":"MICALIS - MICrobiologie de l'ALImentation au Service de la Sant\u00e9 (F-78350 JOUY-EN-JOSAS - France)","institution_ids":["https://openalex.org/I3017594750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026415146","display_name":"Vincent Fromion","orcid":"https://orcid.org/0000-0002-9194-5426"},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Fromion","raw_affiliation_strings":["1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","MIG - Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome (B\u00e2timent 233 Domaine de Vilvert 78350 Jouy en Josas Cedex - France)"],"affiliations":[{"raw_affiliation_string":"1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I22248866"]},{"raw_affiliation_string":"MIG - Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome (B\u00e2timent 233 Domaine de Vilvert 78350 Jouy en Josas Cedex - France)","institution_ids":["https://openalex.org/I4210159481"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080851047","display_name":"Anne Goelzer","orcid":"https://orcid.org/0000-0003-2222-6142"},"institutions":[{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne Goelzer","raw_affiliation_strings":["1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","MIG - Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome (B\u00e2timent 233 Domaine de Vilvert 78350 Jouy en Josas Cedex - France)"],"affiliations":[{"raw_affiliation_string":"1 INRA, UR1077 Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, F-78350 Jouy en Josas, France, 2INRA, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France and 3AgroParisTech, UMR1319 Microbiologie de l'Alimentation au service de la Sant\u00e9, F-78350 Jouy en Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I22248866"]},{"raw_affiliation_string":"MIG - Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome (B\u00e2timent 233 Domaine de Vilvert 78350 Jouy en Josas Cedex - France)","institution_ids":["https://openalex.org/I4210159481"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5042203294"],"corresponding_institution_ids":["https://openalex.org/I22248866","https://openalex.org/I4210159481"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4255,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.87168992,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"28","issue":"20","first_page":"2705","last_page":"2706"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6025077104568481},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.6024478673934937},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5337501764297485},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5332367420196533},{"id":"https://openalex.org/keywords/kalman-filter","display_name":"Kalman filter","score":0.519457995891571},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.48030322790145874},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4612518548965454},{"id":"https://openalex.org/keywords/real-time-computing","display_name":"Real-time computing","score":0.419455885887146},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4191688895225525},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4169188141822815},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.338422954082489},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2246115505695343},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22051385045051575},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10921993851661682},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09587883949279785}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6025077104568481},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.6024478673934937},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5337501764297485},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5332367420196533},{"id":"https://openalex.org/C157286648","wikidata":"https://www.wikidata.org/wiki/Q846780","display_name":"Kalman filter","level":2,"score":0.519457995891571},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.48030322790145874},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4612518548965454},{"id":"https://openalex.org/C79403827","wikidata":"https://www.wikidata.org/wiki/Q3988","display_name":"Real-time computing","level":1,"score":0.419455885887146},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4191688895225525},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4169188141822815},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.338422954082489},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2246115505695343},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22051385045051575},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10921993851661682},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09587883949279785},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005456","descriptor_name":"Fluorescent Dyes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005456","descriptor_name":"Fluorescent Dyes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005456","descriptor_name":"Fluorescent Dyes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017930","descriptor_name":"Genes, Reporter","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017930","descriptor_name":"Genes, Reporter","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017930","descriptor_name":"Genes, Reporter","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049452","descriptor_name":"Green Fluorescent Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D049452","descriptor_name":"Green Fluorescent Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D049452","descriptor_name":"Green Fluorescent Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D049452","descriptor_name":"Green Fluorescent Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D049452","descriptor_name":"Green Fluorescent Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D049452","descriptor_name":"Green Fluorescent Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts422","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts422","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/20/2705/48873415/bioinformatics_28_20_2705.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22764159","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22764159","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-01204252v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01204252","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts422","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts422","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/20/2705/48873415/bioinformatics_28_20_2705.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2153797177.pdf","grobid_xml":"https://content.openalex.org/works/W2153797177.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1974642741","https://openalex.org/W1989401419","https://openalex.org/W1996264210","https://openalex.org/W2038186289","https://openalex.org/W2110367525","https://openalex.org/W2153856860"],"related_works":["https://openalex.org/W2618286804","https://openalex.org/W2329643025","https://openalex.org/W3131163342","https://openalex.org/W2166271660","https://openalex.org/W2092256833","https://openalex.org/W2142369114","https://openalex.org/W2002770077","https://openalex.org/W2361728394","https://openalex.org/W2352631095","https://openalex.org/W2408577762"],"abstract_inverted_index":{"The":[0],"BasyLiCA":[1],"software":[2],"and":[3],"the":[4],"related":[5],"documentation":[6],"are":[7],"available":[8],"at":[9],"http://genome.jouy.inra.fr/basylica.":[10]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}