{"id":"https://openalex.org/W2116412037","doi":"https://doi.org/10.1093/bioinformatics/btr608","title":"AURA: Atlas of UTR Regulatory Activity","display_name":"AURA: Atlas of UTR Regulatory Activity","publication_year":2011,"publication_date":"2011-11-04","ids":{"openalex":"https://openalex.org/W2116412037","doi":"https://doi.org/10.1093/bioinformatics/btr608","mag":"2116412037","pmid":"https://pubmed.ncbi.nlm.nih.gov/22057158"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr608","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr608","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/142/16902897/btr608.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/142/16902897/btr608.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085703369","display_name":"Erik Dassi","orcid":"https://orcid.org/0000-0003-4487-0449"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"E. Dassi","raw_affiliation_strings":["Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy"],"affiliations":[{"raw_affiliation_string":"Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029497576","display_name":"Andrea Malossini","orcid":null},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"A. Malossini","raw_affiliation_strings":["Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy"],"affiliations":[{"raw_affiliation_string":"Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039627791","display_name":"Angela Re","orcid":"https://orcid.org/0000-0002-3179-6967"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"A. Re","raw_affiliation_strings":["Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy"],"affiliations":[{"raw_affiliation_string":"Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076382228","display_name":"Tommaso Mazza","orcid":"https://orcid.org/0000-0003-0434-8533"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"T. Mazza","raw_affiliation_strings":["Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy"],"affiliations":[{"raw_affiliation_string":"Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002300255","display_name":"Toma Tebaldi","orcid":"https://orcid.org/0000-0002-0625-1631"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"T. Tebaldi","raw_affiliation_strings":["Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy"],"affiliations":[{"raw_affiliation_string":"Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046136215","display_name":"Luigi Caputi","orcid":"https://orcid.org/0000-0002-5724-1943"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"L. Caputi","raw_affiliation_strings":["Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy"],"affiliations":[{"raw_affiliation_string":"Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085732836","display_name":"Alessandro Quattrone","orcid":"https://orcid.org/0000-0003-3333-7630"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"A. Quattrone","raw_affiliation_strings":["Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy"],"affiliations":[{"raw_affiliation_string":"Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole, 101, 38123 Mattarello (TN), Italy","institution_ids":["https://openalex.org/I193223587"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5085703369"],"corresponding_institution_ids":["https://openalex.org/I193223587"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.9956,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.86478232,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"28","issue":"1","first_page":"142","last_page":"144"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/three-prime-untranslated-region","display_name":"Three prime untranslated region","score":0.6431760787963867},{"id":"https://openalex.org/keywords/untranslated-region","display_name":"Untranslated region","score":0.6308945417404175},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.616308867931366},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4796900451183319},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45633310079574585},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.4477607011795044},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4270707070827484},{"id":"https://openalex.org/keywords/aura","display_name":"Aura","score":0.4226284325122833},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36839839816093445},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.33534467220306396},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09276878833770752},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.07504129409790039}],"concepts":[{"id":"https://openalex.org/C22667442","wikidata":"https://www.wikidata.org/wiki/Q3272830","display_name":"Three prime untranslated region","level":5,"score":0.6431760787963867},{"id":"https://openalex.org/C89604277","wikidata":"https://www.wikidata.org/wiki/Q424345","display_name":"Untranslated region","level":4,"score":0.6308945417404175},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.616308867931366},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4796900451183319},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45633310079574585},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.4477607011795044},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4270707070827484},{"id":"https://openalex.org/C2777350023","wikidata":"https://www.wikidata.org/wiki/Q1154226","display_name":"Aura","level":3,"score":0.4226284325122833},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36839839816093445},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.33534467220306396},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09276878833770752},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.07504129409790039},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020506","descriptor_name":"Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020506","descriptor_name":"Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020506","descriptor_name":"Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr608","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr608","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/142/16902897/btr608.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22057158","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22057158","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:iris.unitn.it:11572/90921","is_oa":false,"landing_page_url":"http://hdl.handle.net/11572/90921","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:100739","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100739","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr608","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr608","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/142/16902897/btr608.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.699999988079071,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320326086","display_name":"Provincia Autonoma di Trento","ror":"https://ror.org/017e99q89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116412037.pdf","grobid_xml":"https://content.openalex.org/works/W2116412037.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1994406092","https://openalex.org/W1995224771","https://openalex.org/W2005707003","https://openalex.org/W2033848182","https://openalex.org/W2053835153","https://openalex.org/W2073424121","https://openalex.org/W2076495609","https://openalex.org/W2113524952","https://openalex.org/W2120695614","https://openalex.org/W2122732537","https://openalex.org/W2127640118","https://openalex.org/W2134118500","https://openalex.org/W2143407915","https://openalex.org/W2156201868","https://openalex.org/W2167155938"],"related_works":["https://openalex.org/W2386767893","https://openalex.org/W2130669936","https://openalex.org/W3145919624","https://openalex.org/W4230503687","https://openalex.org/W977309228","https://openalex.org/W2050159684","https://openalex.org/W2066198055","https://openalex.org/W1605218324","https://openalex.org/W2073461718","https://openalex.org/W2029260884"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}