{"id":"https://openalex.org/W2106876741","doi":"https://doi.org/10.1093/bioinformatics/btr465","title":"Robust synthetic gene network design via library-based search method","display_name":"Robust synthetic gene network design via library-based search method","publication_year":2011,"publication_date":"2011-08-17","ids":{"openalex":"https://openalex.org/W2106876741","doi":"https://doi.org/10.1093/bioinformatics/btr465","mag":"2106876741","pmid":"https://pubmed.ncbi.nlm.nih.gov/21849394"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr465","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr465","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/19/2700/48866182/bioinformatics_27_19_2700.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/19/2700/48866182/bioinformatics_27_19_2700.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004066253","display_name":"Chih\u2010Hung Wu","orcid":"https://orcid.org/0000-0003-3804-0852"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Chih-Hung Wu","raw_affiliation_strings":["1 Lab of Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, Taiwan 30013 and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30068, Taiwan, R.O.C"],"affiliations":[{"raw_affiliation_string":"1 Lab of Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, Taiwan 30013 and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30068, Taiwan, R.O.C","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I25846049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017638702","display_name":"Hsiao\u2010Ching Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hsiao-Ching Lee","raw_affiliation_strings":["1 Lab of Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, Taiwan 30013 and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30068, Taiwan, R.O.C"],"affiliations":[{"raw_affiliation_string":"1 Lab of Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, Taiwan 30013 and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30068, Taiwan, R.O.C","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I25846049"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038219293","display_name":"Bor\u2010Sen Chen","orcid":"https://orcid.org/0000-0003-1644-6106"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Bor-Sen Chen","raw_affiliation_strings":["1 Lab of Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, Taiwan 30013 and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30068, Taiwan, R.O.C"],"affiliations":[{"raw_affiliation_string":"1 Lab of Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, Taiwan 30013 and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30068, Taiwan, R.O.C","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I25846049"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004066253"],"corresponding_institution_ids":["https://openalex.org/I148366613","https://openalex.org/I25846049"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.5346,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.89791502,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"19","first_page":"2700","last_page":"2706"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7035488486289978},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4556567668914795},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3654314875602722},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3439562916755676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18720391392707825}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7035488486289978},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4556567668914795},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3654314875602722},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3439562916755676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18720391392707825}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005813","descriptor_name":"Genes, Synthetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005813","descriptor_name":"Genes, Synthetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005813","descriptor_name":"Genes, Synthetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr465","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr465","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/19/2700/48866182/bioinformatics_27_19_2700.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21849394","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21849394","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/19/2700","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/19/2700","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr465","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr465","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/19/2700/48866182/bioinformatics_27_19_2700.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G37187342","display_name":null,"funder_award_id":"99-2745-E-007-001-ASP","funder_id":"https://openalex.org/F4320321040","funder_display_name":"National Science Council"},{"id":"https://openalex.org/G8737284672","display_name":null,"funder_award_id":"NSC 99","funder_id":"https://openalex.org/F4320321040","funder_display_name":"National Science Council"}],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106876741.pdf","grobid_xml":"https://content.openalex.org/works/W2106876741.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1557270760","https://openalex.org/W1599969036","https://openalex.org/W1639032689","https://openalex.org/W1645305843","https://openalex.org/W1659842140","https://openalex.org/W1946177469","https://openalex.org/W1964259034","https://openalex.org/W1977624796","https://openalex.org/W1979159575","https://openalex.org/W1982228455","https://openalex.org/W1987184800","https://openalex.org/W1992587054","https://openalex.org/W1995156097","https://openalex.org/W2007769474","https://openalex.org/W2008867005","https://openalex.org/W2013719504","https://openalex.org/W2019327157","https://openalex.org/W2028569720","https://openalex.org/W2043096047","https://openalex.org/W2057993765","https://openalex.org/W2063921800","https://openalex.org/W2071523283","https://openalex.org/W2080613381","https://openalex.org/W2083852416","https://openalex.org/W2091731123","https://openalex.org/W2105631762","https://openalex.org/W2109389103","https://openalex.org/W2110071847","https://openalex.org/W2110856985","https://openalex.org/W2111759547","https://openalex.org/W2111870329","https://openalex.org/W2121987905","https://openalex.org/W2123097315","https://openalex.org/W2130912501","https://openalex.org/W2132828256","https://openalex.org/W2134759932","https://openalex.org/W2135038320","https://openalex.org/W2137325336","https://openalex.org/W2139865155","https://openalex.org/W2149159583","https://openalex.org/W2149536725","https://openalex.org/W2158075875","https://openalex.org/W2158721036","https://openalex.org/W2166401033","https://openalex.org/W2904250082","https://openalex.org/W3023540311","https://openalex.org/W6655106530","https://openalex.org/W6676789118"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
