{"id":"https://openalex.org/W2147370995","doi":"https://doi.org/10.1093/bioinformatics/btr422","title":"Stage prediction of embryonic stem cell differentiation from genome-wide expression data","display_name":"Stage prediction of embryonic stem cell differentiation from genome-wide expression data","publication_year":2011,"publication_date":"2011-07-15","ids":{"openalex":"https://openalex.org/W2147370995","doi":"https://doi.org/10.1093/bioinformatics/btr422","mag":"2147370995","pmid":"https://pubmed.ncbi.nlm.nih.gov/21765096"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr422","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr422","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/18/2546/48868808/bioinformatics_27_18_2546.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/18/2546/48868808/bioinformatics_27_18_2546.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033376376","display_name":"Lan \u017dagar","orcid":null},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]},{"id":"https://openalex.org/I124601658","display_name":"University of Parma","ror":"https://ror.org/02k7wn190","country_code":"IT","type":"education","lineage":["https://openalex.org/I124601658"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Lan Zagar","raw_affiliation_strings":["1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I25217355","https://openalex.org/I124601658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001352404","display_name":"Francesca Mulas","orcid":null},"institutions":[{"id":"https://openalex.org/I124601658","display_name":"University of Parma","ror":"https://ror.org/02k7wn190","country_code":"IT","type":"education","lineage":["https://openalex.org/I124601658"]},{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesca Mulas","raw_affiliation_strings":["1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I25217355","https://openalex.org/I124601658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056806754","display_name":"Silvia Garagna","orcid":"https://orcid.org/0000-0003-0803-2405"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]},{"id":"https://openalex.org/I124601658","display_name":"University of Parma","ror":"https://ror.org/02k7wn190","country_code":"IT","type":"education","lineage":["https://openalex.org/I124601658"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silvia Garagna","raw_affiliation_strings":["1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I25217355","https://openalex.org/I124601658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035497610","display_name":"Maurizio Zuccotti","orcid":"https://orcid.org/0000-0003-4648-0663"},"institutions":[{"id":"https://openalex.org/I124601658","display_name":"University of Parma","ror":"https://ror.org/02k7wn190","country_code":"IT","type":"education","lineage":["https://openalex.org/I124601658"]},{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Maurizio Zuccotti","raw_affiliation_strings":["1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I25217355","https://openalex.org/I124601658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050932220","display_name":"Riccardo Bellazzi","orcid":"https://orcid.org/0000-0002-6974-9808"},"institutions":[{"id":"https://openalex.org/I124601658","display_name":"University of Parma","ror":"https://ror.org/02k7wn190","country_code":"IT","type":"education","lineage":["https://openalex.org/I124601658"]},{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Riccardo Bellazzi","raw_affiliation_strings":["1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I25217355","https://openalex.org/I124601658"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073792028","display_name":"Bla\u017e Zupan","orcid":"https://orcid.org/0000-0002-5864-7056"},"institutions":[{"id":"https://openalex.org/I124601658","display_name":"University of Parma","ror":"https://ror.org/02k7wn190","country_code":"IT","type":"education","lineage":["https://openalex.org/I124601658"]},{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Blaz Zupan","raw_affiliation_strings":["1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia, 2Centre for Tissue Engineering, University of Pavia, Pavia, 3Dipartimento di Biologia Animale, Laboratorio di Biologia dello Sviluppo, University of Pavia, Pavia, 4Sezione di Istologia ed Embriologia, Dipartimento di Medicina Sperimentale, University of Parma, Parma, 5Dipartimento di Informatica e Sistemistica, University of Pavia, Pavia, Italy and 6Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I25217355","https://openalex.org/I124601658"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5033376376"],"corresponding_institution_ids":["https://openalex.org/I124601658","https://openalex.org/I25217355"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8004,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.72092909,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"18","first_page":"2546","last_page":"2553"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10505","display_name":"Pluripotent Stem Cells Research","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10505","display_name":"Pluripotent Stem Cells Research","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/embryonic-stem-cell","display_name":"Embryonic stem cell","score":0.7467068433761597},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5518999099731445},{"id":"https://openalex.org/keywords/stem-cell","display_name":"Stem cell","score":0.5352381467819214},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5208569169044495},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5135815143585205},{"id":"https://openalex.org/keywords/cellular-differentiation","display_name":"Cellular differentiation","score":0.49446964263916016},{"id":"https://openalex.org/keywords/stage","display_name":"Stage (stratigraphy)","score":0.47679615020751953},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4331783652305603},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36133506894111633},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3405991494655609},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22544512152671814}],"concepts":[{"id":"https://openalex.org/C145103041","wikidata":"https://www.wikidata.org/wiki/Q1151519","display_name":"Embryonic stem cell","level":3,"score":0.7467068433761597},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5518999099731445},{"id":"https://openalex.org/C28328180","wikidata":"https://www.wikidata.org/wiki/Q48196","display_name":"Stem cell","level":2,"score":0.5352381467819214},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5208569169044495},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5135815143585205},{"id":"https://openalex.org/C148738053","wikidata":"https://www.wikidata.org/wiki/Q210861","display_name":"Cellular differentiation","level":3,"score":0.49446964263916016},{"id":"https://openalex.org/C146357865","wikidata":"https://www.wikidata.org/wiki/Q1123245","display_name":"Stage (stratigraphy)","level":2,"score":0.47679615020751953},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4331783652305603},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36133506894111633},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3405991494655609},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22544512152671814},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr422","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr422","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/18/2546/48868808/bioinformatics_27_18_2546.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21765096","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21765096","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repozitorij.uni-lj.si:IzpisGradiva.php?id=49428","is_oa":true,"landing_page_url":"https://repozitorij.uni-lj.si/IzpisGradiva.php?id=49428","pdf_url":null,"source":{"id":"https://openalex.org/S4377196268","display_name":"Repository of the University of Ljubljana (University of Ljubljana)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I153976015","host_organization_name":"University of Ljubljana","host_organization_lineage":["https://openalex.org/I153976015"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, vol. 18, no. 27, pp. 2546-2553, 2011.","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/18/2546","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/18/2546","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr422","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr422","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/18/2546/48868808/bioinformatics_27_18_2546.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2096406141","display_name":null,"funder_award_id":"242038","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5197067802","display_name":null,"funder_award_id":"L2-1112","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G5769677123","display_name":null,"funder_award_id":"P2-0209","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321499","display_name":"Fondazione Cariplo","ror":"https://ror.org/01gb56c55"},{"id":"https://openalex.org/F4320322554","display_name":"Javna Agencija za Raziskovalno Dejavnost RS","ror":"https://ror.org/059bp8k51"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147370995.pdf","grobid_xml":"https://content.openalex.org/works/W2147370995.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1565746575","https://openalex.org/W1966089218","https://openalex.org/W1972298775","https://openalex.org/W1976209715","https://openalex.org/W1986710894","https://openalex.org/W2012372680","https://openalex.org/W2014426141","https://openalex.org/W2024425375","https://openalex.org/W2027950141","https://openalex.org/W2028925572","https://openalex.org/W2042673292","https://openalex.org/W2047221353","https://openalex.org/W2053911973","https://openalex.org/W2086948271","https://openalex.org/W2100668965","https://openalex.org/W2108414494","https://openalex.org/W2117623697","https://openalex.org/W2120169559","https://openalex.org/W2120865735","https://openalex.org/W2125987139","https://openalex.org/W2127702552","https://openalex.org/W2133210805","https://openalex.org/W2137225583","https://openalex.org/W2139556877","https://openalex.org/W2150892663","https://openalex.org/W2156690217","https://openalex.org/W2157825442","https://openalex.org/W2162183200","https://openalex.org/W2165376493","https://openalex.org/W2493080670","https://openalex.org/W2792308698","https://openalex.org/W2912748147","https://openalex.org/W3101685505","https://openalex.org/W6671910543","https://openalex.org/W6749498781","https://openalex.org/W6763296836"],"related_works":["https://openalex.org/W1966678537","https://openalex.org/W2086525401","https://openalex.org/W2381724992","https://openalex.org/W2047185374","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W2392243736","https://openalex.org/W3178279768","https://openalex.org/W2053561999"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
