{"id":"https://openalex.org/W2148559413","doi":"https://doi.org/10.1093/bioinformatics/btr407","title":"Simulating systems genetics data with SysGenSIM","display_name":"Simulating systems genetics data with SysGenSIM","publication_year":2011,"publication_date":"2011-07-06","ids":{"openalex":"https://openalex.org/W2148559413","doi":"https://doi.org/10.1093/bioinformatics/btr407","mag":"2148559413","pmid":"https://pubmed.ncbi.nlm.nih.gov/21737438"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr407","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/17/2459/48862124/bioinformatics_27_17_2459.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/17/2459/48862124/bioinformatics_27_17_2459.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019342840","display_name":"Andr\u00e9a Pinna","orcid":"https://orcid.org/0000-0002-2388-7404"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrea Pinna","raw_affiliation_strings":["1 CRS4 Bioinformatica, 09010 Pula (CA), Italy, 2Department of Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 and 3Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0477, USA"],"affiliations":[{"raw_affiliation_string":"1 CRS4 Bioinformatica, 09010 Pula (CA), Italy, 2Department of Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 and 3Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0477, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034974535","display_name":"Nicola Soranzo","orcid":"https://orcid.org/0000-0003-3627-5340"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicola Soranzo","raw_affiliation_strings":["1 CRS4 Bioinformatica, 09010 Pula (CA), Italy, 2Department of Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 and 3Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0477, USA"],"affiliations":[{"raw_affiliation_string":"1 CRS4 Bioinformatica, 09010 Pula (CA), Italy, 2Department of Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 and 3Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0477, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015854885","display_name":"Ina Hoeschele","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ina Hoeschele","raw_affiliation_strings":["1 CRS4 Bioinformatica, 09010 Pula (CA), Italy, 2Department of Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 and 3Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0477, USA"],"affiliations":[{"raw_affiliation_string":"1 CRS4 Bioinformatica, 09010 Pula (CA), Italy, 2Department of Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 and 3Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0477, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062476480","display_name":"Alberto de la Fuente","orcid":"https://orcid.org/0000-0001-5415-9816"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alberto de la Fuente","raw_affiliation_strings":["1 CRS4 Bioinformatica, 09010 Pula (CA), Italy, 2Department of Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 and 3Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0477, USA"],"affiliations":[{"raw_affiliation_string":"1 CRS4 Bioinformatica, 09010 Pula (CA), Italy, 2Department of Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 and 3Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0477, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5062476480"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.6031,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.9009901,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"17","first_page":"2459","last_page":"2462"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7318681478500366},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.6495009064674377},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6296794414520264},{"id":"https://openalex.org/keywords/expression-quantitative-trait-loci","display_name":"Expression quantitative trait loci","score":0.602407693862915},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.578263521194458},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5514232516288757},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5047725439071655},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.5023505687713623},{"id":"https://openalex.org/keywords/graphical-model","display_name":"Graphical model","score":0.4190353751182556},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2576581835746765},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23592007160186768},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21149411797523499},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2107383906841278},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1991024613380432},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1527138650417328}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7318681478500366},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.6495009064674377},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6296794414520264},{"id":"https://openalex.org/C168393362","wikidata":"https://www.wikidata.org/wiki/Q5421706","display_name":"Expression quantitative trait loci","level":5,"score":0.602407693862915},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.578263521194458},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5514232516288757},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5047725439071655},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.5023505687713623},{"id":"https://openalex.org/C155846161","wikidata":"https://www.wikidata.org/wiki/Q1143367","display_name":"Graphical model","level":2,"score":0.4190353751182556},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2576581835746765},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23592007160186768},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21149411797523499},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2107383906841278},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1991024613380432},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1527138650417328},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btr407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr407","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/17/2459/48862124/bioinformatics_27_17_2459.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21737438","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21737438","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:iris.unica.it:11584/69401","is_oa":true,"landing_page_url":"http://hdl.handle.net/11584/69401","pdf_url":"http://bioinformatics.oxfordjournals.org/content/27/17/2459.full","source":{"id":"https://openalex.org/S4377196293","display_name":"UNICA IRIS Institutional Research Information System (University of Cagliari)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172446870","host_organization_name":"University of Cagliari","host_organization_lineage":["https://openalex.org/I172446870"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.972.6970","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.972.6970","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2011/07/06/bioinformatics.btr407.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2431064","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3157927","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/17/2459","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/17/2459","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr407","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/17/2459/48862124/bioinformatics_27_17_2459.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2148559413.pdf","grobid_xml":"https://content.openalex.org/works/W2148559413.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1549228047","https://openalex.org/W1644749979","https://openalex.org/W1893022572","https://openalex.org/W1966610596","https://openalex.org/W1968913339","https://openalex.org/W1970964234","https://openalex.org/W1973051306","https://openalex.org/W1985756920","https://openalex.org/W1994050986","https://openalex.org/W1997894191","https://openalex.org/W2008395997","https://openalex.org/W2008620264","https://openalex.org/W2014347464","https://openalex.org/W2022821295","https://openalex.org/W2023348596","https://openalex.org/W2025940841","https://openalex.org/W2036010272","https://openalex.org/W2038153693","https://openalex.org/W2043475579","https://openalex.org/W2047031939","https://openalex.org/W2059152510","https://openalex.org/W2069898971","https://openalex.org/W2085458327","https://openalex.org/W2086211366","https://openalex.org/W2088738061","https://openalex.org/W2094248448","https://openalex.org/W2099551325","https://openalex.org/W2108069662","https://openalex.org/W2115108153","https://openalex.org/W2117007075","https://openalex.org/W2118308505","https://openalex.org/W2137474062","https://openalex.org/W2139997707","https://openalex.org/W2148860875","https://openalex.org/W2157121418","https://openalex.org/W2161102342","https://openalex.org/W2163480486","https://openalex.org/W2171151258","https://openalex.org/W4312512934","https://openalex.org/W6632922266","https://openalex.org/W6648611955"],"related_works":["https://openalex.org/W2164780420","https://openalex.org/W2995716764","https://openalex.org/W2995369528","https://openalex.org/W2798849146","https://openalex.org/W2108774277","https://openalex.org/W4381278040","https://openalex.org/W2380427002","https://openalex.org/W2040991168","https://openalex.org/W4249795164","https://openalex.org/W2624709009"],"abstract_inverted_index":{"alf@crs4.it.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2015,"cited_by_count":6},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
