{"id":"https://openalex.org/W2128196429","doi":"https://doi.org/10.1093/bioinformatics/btr340","title":"Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties","display_name":"Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties","publication_year":2011,"publication_date":"2011-06-08","ids":{"openalex":"https://openalex.org/W2128196429","doi":"https://doi.org/10.1093/bioinformatics/btr340","mag":"2128196429","pmid":"https://pubmed.ncbi.nlm.nih.gov/21653515"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr340","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2062/48865787/bioinformatics_27_15_2062.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2062/48865787/bioinformatics_27_15_2062.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029468543","display_name":"Shu-An Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]},{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN","TW"],"is_corresponding":true,"raw_author_name":"Shu-An Chen","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan, 2Department of Biotechnology, Indian Institute of Technology (IIT) Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan, 2Department of Biotechnology, Indian Institute of Technology (IIT) Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I24676775","https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008287088","display_name":"Yu\u2010Yen Ou","orcid":"https://orcid.org/0000-0002-9894-926X"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]},{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN","TW"],"is_corresponding":false,"raw_author_name":"Yu-Yen Ou","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan, 2Department of Biotechnology, Indian Institute of Technology (IIT) Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan, 2Department of Biotechnology, Indian Institute of Technology (IIT) Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I24676775","https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045675277","display_name":"Tzong-Yi Lee","orcid":"https://orcid.org/0000-0001-8475-7868"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]},{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["IN","TW"],"is_corresponding":false,"raw_author_name":"Tzong-Yi Lee","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan, 2Department of Biotechnology, Indian Institute of Technology (IIT) Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan, 2Department of Biotechnology, Indian Institute of Technology (IIT) Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I24676775","https://openalex.org/I99908691"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046879365","display_name":"M. Michael Gromiha","orcid":"https://orcid.org/0000-0002-1776-4096"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]},{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["IN","TW"],"is_corresponding":false,"raw_author_name":"M. Michael Gromiha","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan, 2Department of Biotechnology, Indian Institute of Technology (IIT) Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan, 2Department of Biotechnology, Indian Institute of Technology (IIT) Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I24676775","https://openalex.org/I99908691"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5029468543"],"corresponding_institution_ids":["https://openalex.org/I24676775","https://openalex.org/I99908691"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6008,"has_fulltext":true,"cited_by_count":90,"citation_normalized_percentile":{"value":0.83022271,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"27","issue":"15","first_page":"2062","last_page":"2067"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transporter","display_name":"Transporter","score":0.8111693859100342},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5959571599960327},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3914254903793335},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33354371786117554},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.24756190180778503},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2110675573348999}],"concepts":[{"id":"https://openalex.org/C149011108","wikidata":"https://www.wikidata.org/wiki/Q652985","display_name":"Transporter","level":3,"score":0.8111693859100342},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5959571599960327},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3914254903793335},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33354371786117554},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.24756190180778503},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2110675573348999}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D026901","descriptor_name":"Membrane Transport Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr340","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2062/48865787/bioinformatics_27_15_2062.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21653515","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21653515","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/15/2062","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/15/2062","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr340","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2062/48865787/bioinformatics_27_15_2062.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6131928657","display_name":null,"funder_award_id":"BIO/10-11/540/NFSC/MICH","funder_id":"https://openalex.org/F4320322211","funder_display_name":"Indian Institute of Technology Madras"}],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320322211","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49"},{"id":"https://openalex.org/F4320338409","display_name":"Northwest Fisheries Science Center","ror":"https://ror.org/05r7z1k40"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128196429.pdf","grobid_xml":"https://content.openalex.org/works/W2128196429.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1484777458","https://openalex.org/W1547339018","https://openalex.org/W1600814222","https://openalex.org/W1922017469","https://openalex.org/W1972475361","https://openalex.org/W1996794068","https://openalex.org/W2006632467","https://openalex.org/W2043338013","https://openalex.org/W2070019604","https://openalex.org/W2077799065","https://openalex.org/W2079873244","https://openalex.org/W2089478756","https://openalex.org/W2093703685","https://openalex.org/W2096986143","https://openalex.org/W2098875971","https://openalex.org/W2101745615","https://openalex.org/W2102626860","https://openalex.org/W2104707079","https://openalex.org/W2109318635","https://openalex.org/W2117919289","https://openalex.org/W2119493141","https://openalex.org/W2133549457","https://openalex.org/W2137125475","https://openalex.org/W2144944670","https://openalex.org/W2152116196","https://openalex.org/W2153187042","https://openalex.org/W2154352662","https://openalex.org/W2158714788","https://openalex.org/W2158906453","https://openalex.org/W2159299078","https://openalex.org/W2167818640","https://openalex.org/W2168272116","https://openalex.org/W2412450565","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W6632805523"],"related_works":["https://openalex.org/W2610347873","https://openalex.org/W2398288423","https://openalex.org/W3052090716","https://openalex.org/W2167818640","https://openalex.org/W2034081218","https://openalex.org/W4360762856","https://openalex.org/W2589137620","https://openalex.org/W4375951421","https://openalex.org/W4205468646","https://openalex.org/W2800564392"],"abstract_inverted_index":{"http://rbf.bioinfo.tw/~sachen/ttrbf.html":[0]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
