{"id":"https://openalex.org/W2141978878","doi":"https://doi.org/10.1093/bioinformatics/btr325","title":"SEAL: a distributed short read mapping and duplicate removal tool","display_name":"SEAL: a distributed short read mapping and duplicate removal tool","publication_year":2011,"publication_date":"2011-06-22","ids":{"openalex":"https://openalex.org/W2141978878","doi":"https://doi.org/10.1093/bioinformatics/btr325","mag":"2141978878","pmid":"https://pubmed.ncbi.nlm.nih.gov/21697132"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr325","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2159/48865457/bioinformatics_27_15_2159.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2159/48865457/bioinformatics_27_15_2159.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047833562","display_name":"Luca Pireddu","orcid":"https://orcid.org/0000-0002-4663-5613"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Luca Pireddu","raw_affiliation_strings":["CRS4, Polaris, Ed. 1, I-09010 Pula, Italy"],"affiliations":[{"raw_affiliation_string":"CRS4, Polaris, Ed. 1, I-09010 Pula, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041142252","display_name":"Simone Leo","orcid":"https://orcid.org/0000-0001-8271-5429"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Simone Leo","raw_affiliation_strings":["CRS4, Polaris, Ed. 1, I-09010 Pula, Italy"],"affiliations":[{"raw_affiliation_string":"CRS4, Polaris, Ed. 1, I-09010 Pula, Italy","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073829656","display_name":"Gianluigi Zanetti","orcid":"https://orcid.org/0000-0003-1683-7350"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gianluigi Zanetti","raw_affiliation_strings":["CRS4, Polaris, Ed. 1, I-09010 Pula, Italy"],"affiliations":[{"raw_affiliation_string":"CRS4, Polaris, Ed. 1, I-09010 Pula, Italy","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5047833562"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.0462,"has_fulltext":true,"cited_by_count":136,"citation_normalized_percentile":{"value":0.96406929,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"27","issue":"15","first_page":"2159","last_page":"2160"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11407","display_name":"Innovative Microfluidic and Catalytic Techniques Innovation","score":0.9279999732971191,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/seal","display_name":"Seal (emblem)","score":0.8072229623794556},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7724977731704712},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7639321088790894},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.6668719053268433},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.5406728386878967},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.4748925268650055},{"id":"https://openalex.org/keywords/mode","display_name":"Mode (computer interface)","score":0.45125943422317505},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45025599002838135},{"id":"https://openalex.org/keywords/map-reduce","display_name":"Map reduce","score":0.438669890165329},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3821777105331421},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2943837642669678},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.09257921576499939},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07456043362617493},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.06682312488555908},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.06022205948829651}],"concepts":[{"id":"https://openalex.org/C2777755289","wikidata":"https://www.wikidata.org/wiki/Q162919","display_name":"Seal (emblem)","level":2,"score":0.8072229623794556},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7724977731704712},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7639321088790894},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.6668719053268433},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.5406728386878967},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.4748925268650055},{"id":"https://openalex.org/C48677424","wikidata":"https://www.wikidata.org/wiki/Q6888088","display_name":"Mode (computer interface)","level":2,"score":0.45125943422317505},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45025599002838135},{"id":"https://openalex.org/C3019257732","wikidata":"https://www.wikidata.org/wiki/Q567759","display_name":"Map reduce","level":3,"score":0.438669890165329},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3821777105331421},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2943837642669678},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.09257921576499939},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07456043362617493},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.06682312488555908},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.06022205948829651},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr325","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2159/48865457/bioinformatics_27_15_2159.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21697132","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21697132","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/15/2159","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/15/2159","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3137215","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3137215","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr325","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2159/48865457/bioinformatics_27_15_2159.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141978878.pdf","grobid_xml":"https://content.openalex.org/works/W2141978878.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1990073900","https://openalex.org/W2031634592","https://openalex.org/W2093931624","https://openalex.org/W2094271094","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2118526609","https://openalex.org/W2124985265","https://openalex.org/W2127640118","https://openalex.org/W2158297569","https://openalex.org/W2171777347","https://openalex.org/W2173213060","https://openalex.org/W2885727518","https://openalex.org/W6679229923"],"related_works":["https://openalex.org/W4237333278","https://openalex.org/W2389214306","https://openalex.org/W2461810893","https://openalex.org/W4200519391","https://openalex.org/W2326160135","https://openalex.org/W4235240664","https://openalex.org/W2388266094","https://openalex.org/W3136989197","https://openalex.org/W2018417820","https://openalex.org/W2795058838"],"abstract_inverted_index":{"SEAL":[0],"is":[1],"available":[2],"online":[3],"at":[4],"http://biodoop-seal.sourceforge.net/.":[5]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":20},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":12}],"updated_date":"2026-03-05T09:29:38.588285","created_date":"2025-10-10T00:00:00"}
