{"id":"https://openalex.org/W2102555672","doi":"https://doi.org/10.1093/bioinformatics/btr269","title":"Pathway analysis of high-throughput biological data within a Bayesian network framework","display_name":"Pathway analysis of high-throughput biological data within a Bayesian network framework","publication_year":2011,"publication_date":"2011-05-05","ids":{"openalex":"https://openalex.org/W2102555672","doi":"https://doi.org/10.1093/bioinformatics/btr269","mag":"2102555672","pmid":"https://pubmed.ncbi.nlm.nih.gov/21551144"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr269","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr269","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006921251","display_name":"Senol Isci","orcid":"https://orcid.org/0000-0001-5497-700X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]},{"id":"https://openalex.org/I118036225","display_name":"Istanbul Bilgi University","ror":"https://ror.org/04pm4x478","country_code":"TR","type":"education","lineage":["https://openalex.org/I118036225"]}],"countries":["DE","TR","US"],"is_corresponding":true,"raw_author_name":"Senol Isci","raw_affiliation_strings":["1 Bogazici University, Institute of Biomedical Engineering, 34342, Istanbul, Turkey, 2Department of Urology, Johannes Gutenberg University, 55131 Mainz, Germany, 3Department of Bioengineering, Istanbul Bilgi University, 34060, Istanbul, Turkey and 4Department of Medicine, BIDMC Genomics Center, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"1 Bogazici University, Institute of Biomedical Engineering, 34342, Istanbul, Turkey, 2Department of Urology, Johannes Gutenberg University, 55131 Mainz, Germany, 3Department of Bioengineering, Istanbul Bilgi University, 34060, Istanbul, Turkey and 4Department of Medicine, BIDMC Genomics Center, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I4405392","https://openalex.org/I118036225","https://openalex.org/I136199984","https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037356702","display_name":"Cengizhan \u00d6zt\u00fcrk","orcid":"https://orcid.org/0000-0002-6966-0774"},"institutions":[{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I118036225","display_name":"Istanbul Bilgi University","ror":"https://ror.org/04pm4x478","country_code":"TR","type":"education","lineage":["https://openalex.org/I118036225"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["DE","TR","US"],"is_corresponding":false,"raw_author_name":"Cengizhan Ozturk","raw_affiliation_strings":["1 Bogazici University, Institute of Biomedical Engineering, 34342, Istanbul, Turkey, 2Department of Urology, Johannes Gutenberg University, 55131 Mainz, Germany, 3Department of Bioengineering, Istanbul Bilgi University, 34060, Istanbul, Turkey and 4Department of Medicine, BIDMC Genomics Center, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"1 Bogazici University, Institute of Biomedical Engineering, 34342, Istanbul, Turkey, 2Department of Urology, Johannes Gutenberg University, 55131 Mainz, Germany, 3Department of Bioengineering, Istanbul Bilgi University, 34060, Istanbul, Turkey and 4Department of Medicine, BIDMC Genomics Center, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I4405392","https://openalex.org/I118036225","https://openalex.org/I136199984","https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103533006","display_name":"Jon Jones","orcid":null},"institutions":[{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I118036225","display_name":"Istanbul Bilgi University","ror":"https://ror.org/04pm4x478","country_code":"TR","type":"education","lineage":["https://openalex.org/I118036225"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE","TR","US"],"is_corresponding":false,"raw_author_name":"Jon Jones","raw_affiliation_strings":["1 Bogazici University, Institute of Biomedical Engineering, 34342, Istanbul, Turkey, 2Department of Urology, Johannes Gutenberg University, 55131 Mainz, Germany, 3Department of Bioengineering, Istanbul Bilgi University, 34060, Istanbul, Turkey and 4Department of Medicine, BIDMC Genomics Center, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"1 Bogazici University, Institute of Biomedical Engineering, 34342, Istanbul, Turkey, 2Department of Urology, Johannes Gutenberg University, 55131 Mainz, Germany, 3Department of Bioengineering, Istanbul Bilgi University, 34060, Istanbul, Turkey and 4Department of Medicine, BIDMC Genomics Center, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I4405392","https://openalex.org/I118036225","https://openalex.org/I136199984","https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000992292","display_name":"Hasan H. Otu","orcid":"https://orcid.org/0000-0002-9253-8152"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I118036225","display_name":"Istanbul Bilgi University","ror":"https://ror.org/04pm4x478","country_code":"TR","type":"education","lineage":["https://openalex.org/I118036225"]}],"countries":["DE","TR","US"],"is_corresponding":false,"raw_author_name":"Hasan H. Otu","raw_affiliation_strings":["1 Bogazici University, Institute of Biomedical Engineering, 34342, Istanbul, Turkey, 2Department of Urology, Johannes Gutenberg University, 55131 Mainz, Germany, 3Department of Bioengineering, Istanbul Bilgi University, 34060, Istanbul, Turkey and 4Department of Medicine, BIDMC Genomics Center, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"1 Bogazici University, Institute of Biomedical Engineering, 34342, Istanbul, Turkey, 2Department of Urology, Johannes Gutenberg University, 55131 Mainz, Germany, 3Department of Bioengineering, Istanbul Bilgi University, 34060, Istanbul, Turkey and 4Department of Medicine, BIDMC Genomics Center, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I4405392","https://openalex.org/I118036225","https://openalex.org/I136199984","https://openalex.org/I197323543"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006921251"],"corresponding_institution_ids":["https://openalex.org/I118036225","https://openalex.org/I136199984","https://openalex.org/I197323543","https://openalex.org/I4405392"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.391,"has_fulltext":false,"cited_by_count":47,"citation_normalized_percentile":{"value":0.89051644,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"12","first_page":"1667","last_page":"1674"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6996810436248779},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.543843150138855},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5424038767814636},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5050323605537415},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5030850768089294},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5008742809295654},{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.47702571749687195},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.46695050597190857},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.46289411187171936},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4547908902168274},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44270285964012146},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.4389491379261017},{"id":"https://openalex.org/keywords/bayesian-inference","display_name":"Bayesian inference","score":0.43494993448257446},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4178086519241333},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38833123445510864},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36085808277130127},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2242826521396637},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17883065342903137},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15991657972335815},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09209319949150085}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6996810436248779},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.543843150138855},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5424038767814636},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5050323605537415},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5030850768089294},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5008742809295654},{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.47702571749687195},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.46695050597190857},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.46289411187171936},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4547908902168274},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44270285964012146},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.4389491379261017},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.43494993448257446},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4178086519241333},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38833123445510864},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36085808277130127},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2242826521396637},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17883065342903137},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15991657972335815},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09209319949150085},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr269","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr269","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21551144","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21551144","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/12/1667","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/12/1667","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":61,"referenced_works":["https://openalex.org/W1505477995","https://openalex.org/W1517993545","https://openalex.org/W1519252202","https://openalex.org/W1589927998","https://openalex.org/W1593793857","https://openalex.org/W1790978987","https://openalex.org/W1851422093","https://openalex.org/W1981612867","https://openalex.org/W1986501321","https://openalex.org/W1991233059","https://openalex.org/W1995945562","https://openalex.org/W2004809400","https://openalex.org/W2020693578","https://openalex.org/W2026012474","https://openalex.org/W2032051122","https://openalex.org/W2059334100","https://openalex.org/W2060987350","https://openalex.org/W2061857643","https://openalex.org/W2080828514","https://openalex.org/W2082189498","https://openalex.org/W2090554117","https://openalex.org/W2096766502","https://openalex.org/W2097879961","https://openalex.org/W2101879059","https://openalex.org/W2110065044","https://openalex.org/W2117897405","https://openalex.org/W2118069309","https://openalex.org/W2118382442","https://openalex.org/W2120024428","https://openalex.org/W2123060905","https://openalex.org/W2126986674","https://openalex.org/W2127163275","https://openalex.org/W2127938920","https://openalex.org/W2130410032","https://openalex.org/W2132125330","https://openalex.org/W2132992030","https://openalex.org/W2134394193","https://openalex.org/W2134582937","https://openalex.org/W2137409194","https://openalex.org/W2137517357","https://openalex.org/W2138150495","https://openalex.org/W2138289111","https://openalex.org/W2139865581","https://openalex.org/W2141703917","https://openalex.org/W2143891888","https://openalex.org/W2159478099","https://openalex.org/W2170112109","https://openalex.org/W2519805780","https://openalex.org/W2611370172","https://openalex.org/W3106889297","https://openalex.org/W3133236490","https://openalex.org/W3185389132","https://openalex.org/W4205244863","https://openalex.org/W4248700314","https://openalex.org/W4285719527","https://openalex.org/W4298872162","https://openalex.org/W4299515571","https://openalex.org/W6630233692","https://openalex.org/W6635421118","https://openalex.org/W6673567362","https://openalex.org/W6678785312"],"related_works":["https://openalex.org/W4385510321","https://openalex.org/W2131550814","https://openalex.org/W2163262592","https://openalex.org/W249159571","https://openalex.org/W2995291573","https://openalex.org/W2945896137","https://openalex.org/W78967844","https://openalex.org/W2089099679","https://openalex.org/W2952963846","https://openalex.org/W2087167584"],"abstract_inverted_index":{"Accompanying":[0],"BPA":[1],"software":[2],"(BPAS)":[3],"package":[4],"is":[5],"freely":[6],"available":[7],"for":[8],"academic":[9],"use":[10],"at":[11],"http://bumil.boun.edu.tr/bpa.":[12]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":8}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
