{"id":"https://openalex.org/W2123196669","doi":"https://doi.org/10.1093/bioinformatics/btr134","title":"Customizable views on semantically integrated networks for systems biology","display_name":"Customizable views on semantically integrated networks for systems biology","publication_year":2011,"publication_date":"2011-03-16","ids":{"openalex":"https://openalex.org/W2123196669","doi":"https://doi.org/10.1093/bioinformatics/btr134","mag":"2123196669","pmid":"https://pubmed.ncbi.nlm.nih.gov/21414991"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr134","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr134","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/9/1299/48868573/bioinformatics_27_9_1299.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/9/1299/48868573/bioinformatics_27_9_1299.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020856251","display_name":"Jochen Weile","orcid":"https://orcid.org/0000-0003-1628-9390"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Jochen Weile","raw_affiliation_strings":["1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109242321","display_name":"Matthew Pocock","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew Pocock","raw_affiliation_strings":["1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049863628","display_name":"Simon Cockell","orcid":"https://orcid.org/0000-0002-6831-9806"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon J. Cockell","raw_affiliation_strings":["1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059579347","display_name":"Phillip Lord","orcid":"https://orcid.org/0000-0002-4699-6769"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Phillip Lord","raw_affiliation_strings":["1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062612431","display_name":"James M. Dewar","orcid":"https://orcid.org/0000-0003-4153-3818"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James M. Dewar","raw_affiliation_strings":["1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077251468","display_name":"Eva\u2212Maria Holstein","orcid":"https://orcid.org/0000-0002-3027-9052"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Eva\u2212Maria Holstein","raw_affiliation_strings":["1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011926448","display_name":"Darren J. Wilkinson","orcid":"https://orcid.org/0000-0003-0736-802X"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Darren Wilkinson","raw_affiliation_strings":["1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053272751","display_name":"David Lydall","orcid":"https://orcid.org/0000-0003-2478-085X"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Lydall","raw_affiliation_strings":["1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040063046","display_name":"Jennifer Hallinan","orcid":"https://orcid.org/0000-0002-2860-1022"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jennifer Hallinan","raw_affiliation_strings":["1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089978830","display_name":"Anil Wipat","orcid":"https://orcid.org/0000-0001-7310-4191"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anil Wipat","raw_affiliation_strings":["1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU, 2Bioinformatics Support Unit, Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, 3Centre for Integrative Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE4 5PL, 4School of Mathematics and Statistics, Faculty of Science Agriculture and Engineering, Newcastle University, Newcastle upon Tyne NE1 7RU and 5Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne NE2 4HH, UK","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5020856251"],"corresponding_institution_ids":["https://openalex.org/I84884186"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.667,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.69395819,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"27","issue":"9","first_page":"1299","last_page":"1306"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6953277587890625},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4246174693107605},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36562103033065796},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3521532714366913},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3497493863105774},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34571573138237},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.33694183826446533},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3271712064743042}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6953277587890625},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4246174693107605},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36562103033065796},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3521532714366913},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3497493863105774},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34571573138237},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33694183826446533},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3271712064743042}],"mesh":[{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016615","descriptor_name":"Telomere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016615","descriptor_name":"Telomere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016615","descriptor_name":"Telomere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016615","descriptor_name":"Telomere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016615","descriptor_name":"Telomere","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr134","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr134","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/9/1299/48868573/bioinformatics_27_9_1299.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21414991","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21414991","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2087020","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3077072","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr134","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr134","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/9/1299/48868573/bioinformatics_27_9_1299.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2014059278","display_name":"From data to knowledge / the ONDEX System for integrating Life Sciences data sources","funder_award_id":"BB/F006039/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G2633328597","display_name":null,"funder_award_id":"BB/F006039/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G26848450","display_name":null,"funder_award_id":"BB/F006063/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3752877916","display_name":null,"funder_award_id":"BB/F006012/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2123196669.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1558165792","https://openalex.org/W1918680390","https://openalex.org/W1955808217","https://openalex.org/W1972978932","https://openalex.org/W1973260612","https://openalex.org/W1980725176","https://openalex.org/W1988669405","https://openalex.org/W1995402885","https://openalex.org/W2006404990","https://openalex.org/W2006902704","https://openalex.org/W2026180657","https://openalex.org/W2031013242","https://openalex.org/W2047632644","https://openalex.org/W2050876926","https://openalex.org/W2054251921","https://openalex.org/W2055043387","https://openalex.org/W2065458745","https://openalex.org/W2072229457","https://openalex.org/W2073068696","https://openalex.org/W2084619201","https://openalex.org/W2094511058","https://openalex.org/W2098260420","https://openalex.org/W2103017472","https://openalex.org/W2103129584","https://openalex.org/W2103453943","https://openalex.org/W2106647330","https://openalex.org/W2108078368","https://openalex.org/W2113142309","https://openalex.org/W2116117181","https://openalex.org/W2119666497","https://openalex.org/W2122658576","https://openalex.org/W2126449841","https://openalex.org/W2127073167","https://openalex.org/W2127789342","https://openalex.org/W2130910832","https://openalex.org/W2134314989","https://openalex.org/W2139915240","https://openalex.org/W2141387887","https://openalex.org/W2148530409","https://openalex.org/W2149194035","https://openalex.org/W2155209933","https://openalex.org/W2155592392","https://openalex.org/W2159675211","https://openalex.org/W2162520370","https://openalex.org/W2163485494","https://openalex.org/W2753765968","https://openalex.org/W4242156070","https://openalex.org/W6678032435","https://openalex.org/W6680947452","https://openalex.org/W6682768962"],"related_works":["https://openalex.org/W323219885","https://openalex.org/W4292559016","https://openalex.org/W4231937131","https://openalex.org/W1589342014","https://openalex.org/W598950423","https://openalex.org/W4256673449","https://openalex.org/W2143331802","https://openalex.org/W2160964171","https://openalex.org/W2063928587","https://openalex.org/W1480341462"],"abstract_inverted_index":{"The":[0],"Ondex":[1],"yeast":[2],"dataset":[3],"and":[4],"the":[5],"OndexView":[6],"plug-in":[7],"for":[8],"Cytoscape":[9],"are":[10],"accessible":[11],"at":[12],"http://bsu.ncl.ac.uk/ondexview.":[13]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
