{"id":"https://openalex.org/W2140212289","doi":"https://doi.org/10.1093/bioinformatics/btr125","title":"On the organization of bioinformatics core services in biology-based research institutes","display_name":"On the organization of bioinformatics core services in biology-based research institutes","publication_year":2011,"publication_date":"2011-03-13","ids":{"openalex":"https://openalex.org/W2140212289","doi":"https://doi.org/10.1093/bioinformatics/btr125","mag":"2140212289","pmid":"https://pubmed.ncbi.nlm.nih.gov/21402560"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr125","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr125","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/10/1345/48860964/bioinformatics_27_10_1345.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/10/1345/48860964/bioinformatics_27_10_1345.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050670008","display_name":"Olli Kallioniemi","orcid":"https://orcid.org/0000-0002-3231-0332"},"institutions":[{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Olli Kallioniemi","raw_affiliation_strings":["Institute for Molecular Medicine Finland FIMM Nordic EMBL Partnership for Molecular Medicine Biomedicum Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland FIMM Nordic EMBL Partnership for Molecular Medicine Biomedicum Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020129085","display_name":"Lodewyk F.A. Wessels","orcid":"https://orcid.org/0000-0002-1656-6995"},"institutions":[{"id":"https://openalex.org/I4210111138","display_name":"Oncode Institute","ror":"https://ror.org/01n92vv28","country_code":"NL","type":"education","lineage":["https://openalex.org/I4210111138"]},{"id":"https://openalex.org/I2898336195","display_name":"The Netherlands Cancer Institute","ror":"https://ror.org/03xqtf034","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2898336195"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Lodewyk Wessels","raw_affiliation_strings":["Division of Molecular Biology Netherlands Cancer Institute 1066 CX Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Division of Molecular Biology Netherlands Cancer Institute 1066 CX Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210111138","https://openalex.org/I2898336195"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["Structural Biology and BioComputing Programme Spanish National Cancer Research Centre (CNIO) Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Biology and BioComputing Programme Spanish National Cancer Research Centre (CNIO) Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5050670008"],"corresponding_institution_ids":["https://openalex.org/I4210133586"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.55904771,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.65403351,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"27","issue":"10","first_page":"1345","last_page":"1345"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9642999768257141,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.575156033039093},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4771001935005188},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4482908844947815},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44049370288848877},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.398044228553772},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3260953724384308}],"concepts":[{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.575156033039093},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4771001935005188},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4482908844947815},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44049370288848877},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.398044228553772},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3260953724384308},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000047","descriptor_name":"Academies and Institutes","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000078329","descriptor_name":"Workforce","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000047","descriptor_name":"Academies and Institutes","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000078329","descriptor_name":"Workforce","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000047","descriptor_name":"Academies and Institutes","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000078329","descriptor_name":"Workforce","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr125","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr125","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/10/1345/48860964/bioinformatics_27_10_1345.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21402560","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21402560","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/10/1345","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/10/1345","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr125","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr125","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/10/1345/48860964/bioinformatics_27_10_1345.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140212289.pdf","grobid_xml":"https://content.openalex.org/works/W2140212289.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"With":[0],"the":[1,11,20,53,72,84,129,156,159,163,235,256],"growth":[2],"of":[3,13,22,36,48,56,74,96,158,165,170,195,202,210,217,234],"genomics,":[4],"research":[5,31,80,151],"institutes":[6],"are":[7,250],"increasingly":[8],"confronted":[9],"with":[10,177],"task":[12],"providing":[14],"computational":[15,23],"support":[16,38,118,194],"to":[17,40,143,155,187,259],"biologists":[18],"and":[19,29,50,86,113,115,198,208,215,232,254],"provision":[21],"facilities,":[24],"both":[25],"for":[26,71,102,180,242,262],"laboratory-based":[27],"bioinformaticians":[28],"bioinformatics":[30,37,58,75,117,171,263],"groups.":[32],"The":[33,168,222],"optimal":[34],"organization":[35,73,109,169],"units":[39,77,148],"meet":[41],"these":[42],"needs":[43,112],"is":[44,119,184],"a":[45,57,120,226],"common":[46],"topic":[47],"discussion":[49,98],"consideration.":[51],"During":[52],"recent":[54],"evaluation":[55],"core":[59,76],"facility,":[60],"we":[61,67,131,134],"ended":[62],"up":[63],"discussing\u2014in":[64],"general":[65],"terms\u2014what":[66],"consider":[68,135],"basic":[69],"guidelines":[70],"in":[78,88,105],"large":[79],"institutes,":[81],"based":[82],"on":[83,246],"experience":[85],"developments":[87],"our":[89,97],"own":[90],"institutes.":[91],"We":[92],"thought":[93],"that":[94,107,116,124,229],"part":[95],"could":[99],"be":[100,175,240],"useful":[101],"others,":[103],"keeping":[104],"mind":[106],"every":[108],"has":[110],"specific":[111],"requirements,":[114],"fast":[121],"moving":[122],"area":[123],"requires":[125],"continuous":[126],"adaptation.":[127],"In":[128],"following,":[130],"summarized":[132],"what":[133,247],"some":[136],"key":[137],"recommendations:":[138],"(1)":[139],"Bioinformatics":[140],"departments":[141],"have":[142],"clearly":[144],"separate":[145,188],"their":[146,150],"service":[147,172],"from":[149],"laboratories.":[152],"This":[153,237],"contributes":[154],"transparency":[157],"organization,":[160],"especially":[161],"regarding":[162],"allocation":[164],"funds.":[166],"(2)":[167],"unit":[173,223],"should":[174,224],"clear":[176,244],"defined":[178],"missions":[179],"each":[181],"component.":[182],"It":[183],"particularly":[185],"important":[186],"tasks":[189],"by":[190],"topic.":[191],"For":[192],"example:":[193],"database":[196],"development":[197],"maintenance,":[199],"statistical":[200],"analysis":[201,209,216],"high-throughput":[203],"data,":[204],"automatic":[205],"image":[206],"acquisition":[207],"e.g.":[211],"light":[212],"microscopy":[213],"data":[214],"next-generation":[218],"sequencing":[219],"data.":[220],"(3)":[221],"install":[225],"\u2018users":[227],"committee\u2019":[228],"includes":[230],"users":[231],"specialists":[233],"unit.":[236],"committee":[238],"would":[239],"responsible":[241],"establishing":[243],"priorities":[245],"technical":[248],"platforms":[249],"supported":[251],"or":[252],"aborted,":[253],"defining":[255],"rules":[257],"applied":[258],"prioritize":[260],"projects":[261],"support.":[264]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
