{"id":"https://openalex.org/W2150266801","doi":"https://doi.org/10.1093/bioinformatics/btr092","title":"ACT: aggregation and correlation toolbox for analyses of genome tracks","display_name":"ACT: aggregation and correlation toolbox for analyses of genome tracks","publication_year":2011,"publication_date":"2011-02-23","ids":{"openalex":"https://openalex.org/W2150266801","doi":"https://doi.org/10.1093/bioinformatics/btr092","mag":"2150266801","pmid":"https://pubmed.ncbi.nlm.nih.gov/21349863"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr092","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr092","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1152/616066/btr092.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1152/616066/btr092.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110254793","display_name":"Justin Jee","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Justin Jee","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022975867","display_name":"Joel Rozowsky","orcid":"https://orcid.org/0000-0002-3565-0762"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Joel Rozowsky","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066417693","display_name":"Kevin Y. Yip","orcid":"https://orcid.org/0000-0001-5516-9944"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Kevin Y. Yip","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071288817","display_name":"Lucas Lochovsky","orcid":"https://orcid.org/0000-0003-2655-8494"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Lucas Lochovsky","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113469878","display_name":"Robert Bjornson","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Robert Bjornson","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067085817","display_name":"Guoneng Zhong","orcid":null},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Guoneng Zhong","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072237513","display_name":"Zhengdong D. Zhang","orcid":"https://orcid.org/0000-0001-9508-1429"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zhengdong Zhang","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113884071","display_name":"Yutao Fu","orcid":null},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yutao Fu","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100440152","display_name":"Jie Wang","orcid":"https://orcid.org/0000-0003-0038-1045"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jie Wang","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084369008","display_name":"Zhiping Weng","orcid":"https://orcid.org/0000-0002-3032-7966"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zhiping Weng","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042321575","display_name":"Mark Gerstein","orcid":"https://orcid.org/0000-0002-9746-3719"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Mark Gerstein","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular, Cellular and Developmental Biology, 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA, 4Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, 5Department of Computer Science, Yale University, New Haven, CT, 6Bioinformatics Program, Boston University, Boston and 7Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I111088046","https://openalex.org/I32971472","https://openalex.org/I177725633"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5042321575"],"corresponding_institution_ids":["https://openalex.org/I111088046","https://openalex.org/I166722992","https://openalex.org/I177725633","https://openalex.org/I32971472"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.2677,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.88411088,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"8","first_page":"1152","last_page":"1154"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.8663634061813354},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7349315881729126},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.7338849306106567},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.525480329990387},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.478263258934021},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4378906488418579},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.43788689374923706},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4376988708972931},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.41099661588668823},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.37167322635650635},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.2976328134536743},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1486700177192688},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13354259729385376},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12426385283470154},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11564278602600098},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07965171337127686}],"concepts":[{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.8663634061813354},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7349315881729126},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.7338849306106567},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.525480329990387},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.478263258934021},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4378906488418579},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.43788689374923706},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4376988708972931},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.41099661588668823},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.37167322635650635},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2976328134536743},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1486700177192688},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13354259729385376},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12426385283470154},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11564278602600098},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07965171337127686}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr092","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr092","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1152/616066/btr092.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21349863","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21349863","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.umassmed.edu:bioinformatics_pubs-1025","is_oa":true,"landing_page_url":"https://escholarship.umassmed.edu/bioinformatics_pubs/26","pdf_url":null,"source":{"id":"https://openalex.org/S4306400883","display_name":"The Journal of the American Medical Association (JAMA) Network (American Medical Association)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173654999","host_organization_name":"American Medical Association","host_organization_lineage":["https://openalex.org/I173654999"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Program in Bioinformatics and Integrative Biology Publications","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2084536","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3072554","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr092","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr092","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1152/616066/btr092.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.5299999713897705,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2150266801.pdf","grobid_xml":"https://content.openalex.org/works/W2150266801.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1515594846","https://openalex.org/W1973950074","https://openalex.org/W2005281324","https://openalex.org/W2012016911","https://openalex.org/W2024975965","https://openalex.org/W2056904032","https://openalex.org/W2095932050","https://openalex.org/W2102304447","https://openalex.org/W2122732537","https://openalex.org/W2127851640","https://openalex.org/W2150904790","https://openalex.org/W2160825263","https://openalex.org/W2161645441"],"related_works":["https://openalex.org/W2068663075","https://openalex.org/W4205140848","https://openalex.org/W2158272128","https://openalex.org/W2160379721","https://openalex.org/W2009935171","https://openalex.org/W2144311691","https://openalex.org/W2146734921","https://openalex.org/W2057568687","https://openalex.org/W2989829966","https://openalex.org/W2171622167"],"abstract_inverted_index":{"pi@gersteinlab.org.":[0]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}