{"id":"https://openalex.org/W2099796294","doi":"https://doi.org/10.1093/bioinformatics/btr057","title":"tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor","display_name":"tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor","publication_year":2011,"publication_date":"2011-02-07","ids":{"openalex":"https://openalex.org/W2099796294","doi":"https://doi.org/10.1093/bioinformatics/btr057","mag":"2099796294","pmid":"https://pubmed.ncbi.nlm.nih.gov/21300702"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr057","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr057","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1026/48866327/bioinformatics_27_7_1026.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1026/48866327/bioinformatics_27_7_1026.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071329195","display_name":"Antti Honkela","orcid":"https://orcid.org/0000-0001-9193-8093"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["FI","GB"],"is_corresponding":true,"raw_author_name":"Antti Honkela","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, 2Department of Information and Computer Science, Aalto University, Helsinki, Finland, 3Department of Public Health and Primary Care, University of Cambridge, Cambridge and 4Sheffield Institute for Translational Neuroscience and Department of Computer Science, University of Sheffield, Sheffield, UK"],"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, 2Department of Information and Computer Science, Aalto University, Helsinki, Finland, 3Department of Public Health and Primary Care, University of Cambridge, Cambridge and 4Sheffield Institute for Translational Neuroscience and Department of Computer Science, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081","https://openalex.org/I241749","https://openalex.org/I91136226","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063456686","display_name":"Pei Gao","orcid":"https://orcid.org/0000-0001-8649-1290"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Pei Gao","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, 2Department of Information and Computer Science, Aalto University, Helsinki, Finland, 3Department of Public Health and Primary Care, University of Cambridge, Cambridge and 4Sheffield Institute for Translational Neuroscience and Department of Computer Science, University of Sheffield, Sheffield, UK"],"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, 2Department of Information and Computer Science, Aalto University, Helsinki, Finland, 3Department of Public Health and Primary Care, University of Cambridge, Cambridge and 4Sheffield Institute for Translational Neuroscience and Department of Computer Science, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081","https://openalex.org/I241749","https://openalex.org/I91136226","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070941971","display_name":"Jonatan Ropponen","orcid":null},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Jonatan Ropponen","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, 2Department of Information and Computer Science, Aalto University, Helsinki, Finland, 3Department of Public Health and Primary Care, University of Cambridge, Cambridge and 4Sheffield Institute for Translational Neuroscience and Department of Computer Science, University of Sheffield, Sheffield, UK"],"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, 2Department of Information and Computer Science, Aalto University, Helsinki, Finland, 3Department of Public Health and Primary Care, University of Cambridge, Cambridge and 4Sheffield Institute for Translational Neuroscience and Department of Computer Science, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081","https://openalex.org/I241749","https://openalex.org/I91136226","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023995814","display_name":"Magnus Rattray","orcid":"https://orcid.org/0000-0001-8196-5565"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Magnus Rattray","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, 2Department of Information and Computer Science, Aalto University, Helsinki, Finland, 3Department of Public Health and Primary Care, University of Cambridge, Cambridge and 4Sheffield Institute for Translational Neuroscience and Department of Computer Science, University of Sheffield, Sheffield, UK"],"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, 2Department of Information and Computer Science, Aalto University, Helsinki, Finland, 3Department of Public Health and Primary Care, University of Cambridge, Cambridge and 4Sheffield Institute for Translational Neuroscience and Department of Computer Science, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081","https://openalex.org/I241749","https://openalex.org/I91136226","https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023849469","display_name":"Neil D. Lawrence","orcid":"https://orcid.org/0000-0001-9258-1030"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Neil D. Lawrence","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, 2Department of Information and Computer Science, Aalto University, Helsinki, Finland, 3Department of Public Health and Primary Care, University of Cambridge, Cambridge and 4Sheffield Institute for Translational Neuroscience and Department of Computer Science, University of Sheffield, Sheffield, UK"],"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, 2Department of Information and Computer Science, Aalto University, Helsinki, Finland, 3Department of Public Health and Primary Care, University of Cambridge, Cambridge and 4Sheffield Institute for Translational Neuroscience and Department of Computer Science, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081","https://openalex.org/I241749","https://openalex.org/I91136226","https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5071329195"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I241749","https://openalex.org/I32943570","https://openalex.org/I91136226","https://openalex.org/I9927081"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5336,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.66411066,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"27","issue":"7","first_page":"1026","last_page":"1027"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12814","display_name":"Gaussian Processes and Bayesian Inference","score":0.9794999957084656,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9869105815887451},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7714978456497192},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6281445622444153},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5496920943260193},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5161638855934143},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.49416449666023254},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.4520927369594574},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.340340256690979},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2671442925930023},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18829482793807983},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18410032987594604},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1733313500881195},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10091564059257507}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9869105815887451},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7714978456497192},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6281445622444153},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5496920943260193},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5161638855934143},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.49416449666023254},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.4520927369594574},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.340340256690979},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2671442925930023},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18829482793807983},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18410032987594604},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1733313500881195},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10091564059257507}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr057","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr057","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1026/48866327/bioinformatics_27_7_1026.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21300702","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21300702","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/4c654bd5-7f6e-4941-8ef6-064ba154f7bf","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/4c654bd5-7f6e-4941-8ef6-064ba154f7bf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Honkela, A, Gao, P, Ropponen, J, Rattray, M & Lawrence, N D 2011, 'tigre: Transcription factor inference through Gaussian process reconstruction of expression for bioconductor', Bioinformatics, vol. 27, no. 7, btr057, pp. 1026-1027. https://doi.org/10.1093/bioinformatics/btr057","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr057","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr057","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1026/48866327/bioinformatics_27_7_1026.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2969823979","display_name":null,"funder_award_id":"EP/F005687/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099796294.pdf","grobid_xml":"https://content.openalex.org/works/W2099796294.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W2011830506","https://openalex.org/W2028748300","https://openalex.org/W2040627562","https://openalex.org/W2051812123","https://openalex.org/W2097909019","https://openalex.org/W2105129830","https://openalex.org/W2115108153","https://openalex.org/W2125373697","https://openalex.org/W2160697532","https://openalex.org/W2163856173","https://openalex.org/W2173213060","https://openalex.org/W2734823619","https://openalex.org/W6653410821","https://openalex.org/W6674742791"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W3156537409","https://openalex.org/W2747931568","https://openalex.org/W2133055377","https://openalex.org/W2921090651","https://openalex.org/W2098339479"],"abstract_inverted_index":{"The":[0,13],"tigre":[1],"package":[2,14],"is":[3],"included":[4],"in":[5],"Bioconductor":[6],"since":[7],"release":[8],"2.6":[9],"for":[10],"R":[11],"2.11.":[12],"and":[15],"a":[16],"user's":[17],"guide":[18],"are":[19],"available":[20],"at":[21],"http://www.bioconductor.org.":[22]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
