{"id":"https://openalex.org/W2130534254","doi":"https://doi.org/10.1093/bioinformatics/btr045","title":"PiNGO: a Cytoscape plugin to find candidate genes in biological networks","display_name":"PiNGO: a Cytoscape plugin to find candidate genes in biological networks","publication_year":2011,"publication_date":"2011-01-28","ids":{"openalex":"https://openalex.org/W2130534254","doi":"https://doi.org/10.1093/bioinformatics/btr045","mag":"2130534254","pmid":"https://pubmed.ncbi.nlm.nih.gov/21278188"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr045","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1030/48866238/bioinformatics_27_7_1030.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1030/48866238/bioinformatics_27_7_1030.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068272466","display_name":"Michael Smoot","orcid":"https://orcid.org/0000-0002-0584-6537"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE","US"],"is_corresponding":true,"raw_author_name":"Michael Smoot","raw_affiliation_strings":["1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I36258959","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057223513","display_name":"Keiichiro Ono","orcid":"https://orcid.org/0000-0003-4042-3748"},"institutions":[{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["BE","US"],"is_corresponding":false,"raw_author_name":"Keiichiro Ono","raw_affiliation_strings":["1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I36258959","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089373684","display_name":"Trey Ideker","orcid":"https://orcid.org/0000-0002-1708-8454"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","US"],"is_corresponding":false,"raw_author_name":"Trey Ideker","raw_affiliation_strings":["1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I36258959","https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053136070","display_name":"Steven Maere","orcid":"https://orcid.org/0000-0002-5341-136X"},"institutions":[{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","US"],"is_corresponding":false,"raw_author_name":"Steven Maere","raw_affiliation_strings":["1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I36258959","https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5068272466"],"corresponding_institution_ids":["https://openalex.org/I32597200","https://openalex.org/I36258959","https://openalex.org/I4210098178"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.268,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.88360598,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"27","issue":"7","first_page":"1030","last_page":"1031"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.846487283706665},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6576915383338928},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6374291181564331},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5142950415611267},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.49079522490501404},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.48873186111450195},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4270443320274353},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.41982632875442505},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38255470991134644},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.28858810663223267},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11277154088020325}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.846487283706665},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6576915383338928},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6374291181564331},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5142950415611267},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.49079522490501404},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.48873186111450195},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4270443320274353},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.41982632875442505},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38255470991134644},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.28858810663223267},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11277154088020325},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr045","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1030/48866238/bioinformatics_27_7_1030.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21278188","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21278188","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:archive.ugent.be:1213370","is_oa":false,"landing_page_url":"https://biblio.ugent.be/publication/1213370","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:3065683","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3065683","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr045","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1030/48866238/bioinformatics_27_7_1030.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130534254.pdf","grobid_xml":"https://content.openalex.org/works/W2130534254.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1486817521","https://openalex.org/W1966690718","https://openalex.org/W1985213868","https://openalex.org/W1987678450","https://openalex.org/W2097903517","https://openalex.org/W2103017472","https://openalex.org/W2107710781","https://openalex.org/W2109555487","https://openalex.org/W2146264532","https://openalex.org/W2150646520","https://openalex.org/W2159675211","https://openalex.org/W2166468869","https://openalex.org/W2171030481","https://openalex.org/W2171403830"],"related_works":["https://openalex.org/W4287378204","https://openalex.org/W2545422590","https://openalex.org/W2606446052","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W2981957539","https://openalex.org/W4295210903","https://openalex.org/W2036021480","https://openalex.org/W1494668222","https://openalex.org/W2924735795"],"abstract_inverted_index":{"PiNGO":[0,34],"is":[1],"distributed":[2],"as":[3],"an":[4],"open-source":[5],"Java":[6],"package":[7],"under":[8],"the":[9,20,33],"GNU":[10],"General":[11],"Public":[12],"License":[13],"(http://www.gnu.org/),":[14],"and":[15,28],"can":[16],"be":[17],"downloaded":[18],"via":[19],"Cytoscape":[21],"plugin":[22],"manager.":[23],"A":[24],"detailed":[25],"user":[26],"guide":[27],"tutorial":[29],"are":[30],"available":[31],"on":[32],"website":[35],"(http://www.psb.ugent.be/esb/PiNGO.":[36]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-03T22:45:19.894376","created_date":"2025-10-10T00:00:00"}
