{"id":"https://openalex.org/W2138196010","doi":"https://doi.org/10.1093/bioinformatics/btr014","title":"Compression of DNA sequence reads in FASTQ format","display_name":"Compression of DNA sequence reads in FASTQ format","publication_year":2011,"publication_date":"2011-01-19","ids":{"openalex":"https://openalex.org/W2138196010","doi":"https://doi.org/10.1093/bioinformatics/btr014","mag":"2138196010","pmid":"https://pubmed.ncbi.nlm.nih.gov/21252073"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr014","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/860/48863301/bioinformatics_27_6_860.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/860/48863301/bioinformatics_27_6_860.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041822808","display_name":"Sebastian Deorowicz","orcid":"https://orcid.org/0000-0002-9496-733X"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]},{"id":"https://openalex.org/I188884621","display_name":"Lodz University of Technology","ror":"https://ror.org/00s8fpf52","country_code":"PL","type":"education","lineage":["https://openalex.org/I188884621"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Sebastian Deorowicz","raw_affiliation_strings":["1 Institute of Informatics, Silesian University of Technology, Akademicka 16, 44\u2212100 Gliwice and 2Computer Engineering Department, Technical University of \u0141\u00f3d\u017a, Al. Politechniki 11, 90-924 \u0141\u00f3d\u017a, Poland"],"affiliations":[{"raw_affiliation_string":"1 Institute of Informatics, Silesian University of Technology, Akademicka 16, 44\u2212100 Gliwice and 2Computer Engineering Department, Technical University of \u0141\u00f3d\u017a, Al. Politechniki 11, 90-924 \u0141\u00f3d\u017a, Poland","institution_ids":["https://openalex.org/I119004910","https://openalex.org/I188884621"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000229752","display_name":"Szymon Grabowski","orcid":"https://orcid.org/0000-0003-1714-1224"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]},{"id":"https://openalex.org/I188884621","display_name":"Lodz University of Technology","ror":"https://ror.org/00s8fpf52","country_code":"PL","type":"education","lineage":["https://openalex.org/I188884621"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Szymon Grabowski","raw_affiliation_strings":["1 Institute of Informatics, Silesian University of Technology, Akademicka 16, 44\u2212100 Gliwice and 2Computer Engineering Department, Technical University of \u0141\u00f3d\u017a, Al. Politechniki 11, 90-924 \u0141\u00f3d\u017a, Poland"],"affiliations":[{"raw_affiliation_string":"1 Institute of Informatics, Silesian University of Technology, Akademicka 16, 44\u2212100 Gliwice and 2Computer Engineering Department, Technical University of \u0141\u00f3d\u017a, Al. Politechniki 11, 90-924 \u0141\u00f3d\u017a, Poland","institution_ids":["https://openalex.org/I119004910","https://openalex.org/I188884621"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041822808"],"corresponding_institution_ids":["https://openalex.org/I119004910","https://openalex.org/I188884621"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":25.1806,"has_fulltext":false,"cited_by_count":158,"citation_normalized_percentile":{"value":0.99596698,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"27","issue":"6","first_page":"860","last_page":"862"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9678000211715698,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.753939688205719},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.5614754557609558},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.49590834975242615},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.49005353450775146},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.4653884470462799},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4586468040943146},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.41991323232650757},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4134436249732971},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40301698446273804},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.400759220123291},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37263673543930054},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.24835309386253357},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20083704590797424},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.18220290541648865},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1424766182899475},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11867943406105042},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09209063649177551}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.753939688205719},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.5614754557609558},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.49590834975242615},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.49005353450775146},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.4653884470462799},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4586468040943146},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.41991323232650757},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4134436249732971},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40301698446273804},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.400759220123291},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37263673543930054},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.24835309386253357},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20083704590797424},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.18220290541648865},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1424766182899475},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11867943406105042},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09209063649177551}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btr014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr014","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/860/48863301/bioinformatics_27_6_860.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21252073","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21252073","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr014","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/860/48863301/bioinformatics_27_6_860.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138196010.pdf","grobid_xml":"https://content.openalex.org/works/W2138196010.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1970231722","https://openalex.org/W2117608012","https://openalex.org/W2134814259","https://openalex.org/W2137661542","https://openalex.org/W2147492358","https://openalex.org/W2159683766"],"related_works":["https://openalex.org/W2347127313","https://openalex.org/W2112284452","https://openalex.org/W2411730464","https://openalex.org/W1563588491","https://openalex.org/W2385787406","https://openalex.org/W4386771081","https://openalex.org/W3085798047","https://openalex.org/W4243495532","https://openalex.org/W2053421025","https://openalex.org/W2092772380"],"abstract_inverted_index":{"DSRC":[0],"is":[1],"freely":[2],"available":[3],"at":[4],"http:/sun.aei.polsl.pl/dsrc.":[5]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":25},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":7}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}
