{"id":"https://openalex.org/W2059591150","doi":"https://doi.org/10.1093/bioinformatics/btq724","title":"Wave-spec: a preprocessing package for mass spectrometry data","display_name":"Wave-spec: a preprocessing package for mass spectrometry data","publication_year":2011,"publication_date":"2011-01-05","ids":{"openalex":"https://openalex.org/W2059591150","doi":"https://doi.org/10.1093/bioinformatics/btq724","mag":"2059591150","pmid":"https://pubmed.ncbi.nlm.nih.gov/21208983"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq724","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq724","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/739/48865038/bioinformatics_27_5_739.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/739/48865038/bioinformatics_27_5_739.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100351339","display_name":"Ming Li","orcid":"https://orcid.org/0000-0001-8270-2070"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ming Li","raw_affiliation_strings":["1 Department of Biostatistics, Vanderbilt University, Nashville, Tennessee 37232, 2Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia 30322 and 3Cancer Biostatistics Center, Vanderbilt-Ingram Cancer Center, Nashville, Tennessee 37232, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, Vanderbilt University, Nashville, Tennessee 37232, 2Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia 30322 and 3Cancer Biostatistics Center, Vanderbilt-Ingram Cancer Center, Nashville, Tennessee 37232, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115861810","display_name":"Shuo Chen","orcid":"https://orcid.org/0009-0007-7103-6077"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuo Chen","raw_affiliation_strings":["1 Department of Biostatistics, Vanderbilt University, Nashville, Tennessee 37232, 2Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia 30322 and 3Cancer Biostatistics Center, Vanderbilt-Ingram Cancer Center, Nashville, Tennessee 37232, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, Vanderbilt University, Nashville, Tennessee 37232, 2Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia 30322 and 3Cancer Biostatistics Center, Vanderbilt-Ingram Cancer Center, Nashville, Tennessee 37232, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102859377","display_name":"Joan Zhang","orcid":"https://orcid.org/0000-0003-3511-2056"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joan Zhang","raw_affiliation_strings":["1 Department of Biostatistics, Vanderbilt University, Nashville, Tennessee 37232, 2Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia 30322 and 3Cancer Biostatistics Center, Vanderbilt-Ingram Cancer Center, Nashville, Tennessee 37232, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, Vanderbilt University, Nashville, Tennessee 37232, 2Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia 30322 and 3Cancer Biostatistics Center, Vanderbilt-Ingram Cancer Center, Nashville, Tennessee 37232, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013004380","display_name":"Heidi Chen","orcid":"https://orcid.org/0000-0002-1841-6747"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heidi Chen","raw_affiliation_strings":["1 Department of Biostatistics, Vanderbilt University, Nashville, Tennessee 37232, 2Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia 30322 and 3Cancer Biostatistics Center, Vanderbilt-Ingram Cancer Center, Nashville, Tennessee 37232, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, Vanderbilt University, Nashville, Tennessee 37232, 2Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia 30322 and 3Cancer Biostatistics Center, Vanderbilt-Ingram Cancer Center, Nashville, Tennessee 37232, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062656698","display_name":"Yu Shyr","orcid":"https://orcid.org/0000-0003-2086-9670"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu Shyr","raw_affiliation_strings":["1 Department of Biostatistics, Vanderbilt University, Nashville, Tennessee 37232, 2Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia 30322 and 3Cancer Biostatistics Center, Vanderbilt-Ingram Cancer Center, Nashville, Tennessee 37232, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, Vanderbilt University, Nashville, Tennessee 37232, 2Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia 30322 and 3Cancer Biostatistics Center, Vanderbilt-Ingram Cancer Center, Nashville, Tennessee 37232, USA","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100351339"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.0988679,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"27","issue":"5","first_page":"739","last_page":"740"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9805999994277954,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spec#","display_name":"Spec#","score":0.954318106174469},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.7039827108383179},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6852375864982605},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.43609803915023804},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20895373821258545},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13135990500450134},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.10215824842453003}],"concepts":[{"id":"https://openalex.org/C2778565505","wikidata":"https://www.wikidata.org/wiki/Q2207566","display_name":"Spec#","level":2,"score":0.954318106174469},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.7039827108383179},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6852375864982605},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.43609803915023804},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20895373821258545},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13135990500450134},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.10215824842453003}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq724","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq724","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/739/48865038/bioinformatics_27_5_739.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21208983","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21208983","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3105479","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3105479","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq724","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq724","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/739/48865038/bioinformatics_27_5_739.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4699999988079071}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2059591150.pdf","grobid_xml":"https://content.openalex.org/works/W2059591150.grobid-xml"},"referenced_works_count":2,"referenced_works":["https://openalex.org/W2130097513","https://openalex.org/W2131687087"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W878150521","https://openalex.org/W2008941207","https://openalex.org/W2373662841","https://openalex.org/W1970478390","https://openalex.org/W1533638723","https://openalex.org/W294916044","https://openalex.org/W2131667412","https://openalex.org/W2014546971","https://openalex.org/W2019959197"],"abstract_inverted_index":{"The":[0],"package":[1],"can":[2],"be":[3],"downloaded":[4],"at":[5],"http://www.vicc.org/biostatistics/supp.php.":[6],"A":[7],"shared":[8],"mailbox":[9],"(wave-spec@vanderbilt.edu)":[10],"also":[11],"is":[12],"available":[13],"for":[14],"questions":[15],"regarding":[16],"application":[17],"of":[18],"the":[19],"package.":[20]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
