{"id":"https://openalex.org/W2123798878","doi":"https://doi.org/10.1093/bioinformatics/btq663","title":"Open source platform for the execution and analysis of mechanical refolding experiments","display_name":"Open source platform for the execution and analysis of mechanical refolding experiments","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2123798878","doi":"https://doi.org/10.1093/bioinformatics/btq663","mag":"2123798878","pmid":"https://pubmed.ncbi.nlm.nih.gov/21123222"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq663","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq663","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/423/48863939/bioinformatics_27_3_423.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/423/48863939/bioinformatics_27_3_423.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074151433","display_name":"Daniel Aioanei","orcid":"https://orcid.org/0009-0005-4660-7988"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Daniel Aioanei","raw_affiliation_strings":["Department of Biochemistry \u2018G.Moruzzi\u2019, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy","Department of Biochemistry, G.Moruzzi, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry \u2018G.Moruzzi\u2019, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Department of Biochemistry, G.Moruzzi, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067998409","display_name":"Marco Brucale","orcid":"https://orcid.org/0000-0001-7244-4389"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Brucale","raw_affiliation_strings":["Department of Biochemistry \u2018G.Moruzzi\u2019, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy","Department of Biochemistry, G.Moruzzi, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry \u2018G.Moruzzi\u2019, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Department of Biochemistry, G.Moruzzi, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036394652","display_name":"Bruno Samor\u0131\u0300","orcid":null},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Bruno Samor\u00ed","raw_affiliation_strings":["Department of Biochemistry \u2018G.Moruzzi\u2019, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy","Department of Biochemistry, G.Moruzzi, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry \u2018G.Moruzzi\u2019, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Department of Biochemistry, G.Moruzzi, University of Bologna, Via Irnerio 48, 40126 Bologna, Italy","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5074151433"],"corresponding_institution_ids":["https://openalex.org/I9360294"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3018,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.81437355,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"27","issue":"3","first_page":"423","last_page":"425"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11449","display_name":"Mechanical and Optical Resonators","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.7285212278366089},{"id":"https://openalex.org/keywords/kinetics","display_name":"Kinetics","score":0.720771849155426},{"id":"https://openalex.org/keywords/atomic-force-microscopy","display_name":"Atomic force microscopy","score":0.6744080185890198},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.6608489751815796},{"id":"https://openalex.org/keywords/force-spectroscopy","display_name":"Force spectroscopy","score":0.6483039259910583},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5967289805412292},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5163625478744507},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5063403844833374},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.4928188621997833},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4795772433280945},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.41821813583374023},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.3696039021015167},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3442634642124176},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3419208526611328},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.28809475898742676},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1973610520362854},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.17238685488700867},{"id":"https://openalex.org/keywords/mechanical-engineering","display_name":"Mechanical engineering","score":0.16353186964988708},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1281965970993042}],"concepts":[{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.7285212278366089},{"id":"https://openalex.org/C148898269","wikidata":"https://www.wikidata.org/wiki/Q1108792","display_name":"Kinetics","level":2,"score":0.720771849155426},{"id":"https://openalex.org/C102951782","wikidata":"https://www.wikidata.org/wiki/Q49295","display_name":"Atomic force microscopy","level":2,"score":0.6744080185890198},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.6608489751815796},{"id":"https://openalex.org/C119473381","wikidata":"https://www.wikidata.org/wiki/Q49298","display_name":"Force spectroscopy","level":3,"score":0.6483039259910583},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5967289805412292},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5163625478744507},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5063403844833374},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.4928188621997833},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4795772433280945},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.41821813583374023},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.3696039021015167},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3442634642124176},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3419208526611328},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.28809475898742676},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1973610520362854},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.17238685488700867},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.16353186964988708},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1281965970993042},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011489","descriptor_name":"Protein Denaturation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011489","descriptor_name":"Protein Denaturation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011489","descriptor_name":"Protein Denaturation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058849","descriptor_name":"Protein Refolding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058849","descriptor_name":"Protein Refolding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058849","descriptor_name":"Protein Refolding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq663","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq663","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/423/48863939/bioinformatics_27_3_423.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21123222","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21123222","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:zenodo.org:100723","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100723","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq663","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq663","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/423/48863939/bioinformatics_27_3_423.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G7397271645","display_name":null,"funder_award_id":"RBNE03PX83","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"}],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"},{"id":"https://openalex.org/F4320321966","display_name":"Universit\u00e0 degli Studi di Padova","ror":"https://ror.org/00240q980"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123798878.pdf","grobid_xml":"https://content.openalex.org/works/W2123798878.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W2016307290","https://openalex.org/W2034886735","https://openalex.org/W2036475903","https://openalex.org/W2037720334","https://openalex.org/W2041049608","https://openalex.org/W2052192720","https://openalex.org/W2055296359","https://openalex.org/W2079744596","https://openalex.org/W2082958346","https://openalex.org/W2083239064","https://openalex.org/W2089021823","https://openalex.org/W2090807504","https://openalex.org/W2092144432","https://openalex.org/W2104559182","https://openalex.org/W2113286372","https://openalex.org/W2122759946","https://openalex.org/W2141634848","https://openalex.org/W2169529439"],"related_works":["https://openalex.org/W2027750508","https://openalex.org/W4256393323","https://openalex.org/W2792232401","https://openalex.org/W4309247532","https://openalex.org/W2260493136","https://openalex.org/W3194730418","https://openalex.org/W2113188411","https://openalex.org/W4210423528","https://openalex.org/W2976965029","https://openalex.org/W2939859775"],"abstract_inverted_index":{"Software":[0],"and":[1],"documentation":[2],"are":[3],"available":[4],"at":[5],"http://code.google.com/p/refolding":[6],"under":[7],"Apache":[8],"License":[9],"2.0.":[10]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
