{"id":"https://openalex.org/W2172129062","doi":"https://doi.org/10.1093/bioinformatics/btq602","title":"iMAT: an integrative metabolic analysis tool","display_name":"iMAT: an integrative metabolic analysis tool","publication_year":2010,"publication_date":"2010-11-15","ids":{"openalex":"https://openalex.org/W2172129062","doi":"https://doi.org/10.1093/bioinformatics/btq602","mag":"2172129062","pmid":"https://pubmed.ncbi.nlm.nih.gov/21081510"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq602","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq602","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/24/3140/48855110/bioinformatics_26_24_3140.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/24/3140/48855110/bioinformatics_26_24_3140.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080818955","display_name":"Hadas Zur","orcid":"https://orcid.org/0000-0003-1410-5893"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Hadas Zur","raw_affiliation_strings":["1 The Blavatnik School of Computer Science, 2Sackler Faculty of Exact Sciences, The Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978 and 3Computer Science Department, Technion - Israel Institute of Technology, Haifa 32000, Israel"],"affiliations":[{"raw_affiliation_string":"1 The Blavatnik School of Computer Science, 2Sackler Faculty of Exact Sciences, The Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978 and 3Computer Science Department, Technion - Israel Institute of Technology, Haifa 32000, Israel","institution_ids":["https://openalex.org/I174306211","https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063492133","display_name":"Eytan Ruppin","orcid":"https://orcid.org/0000-0002-7862-3940"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Eytan Ruppin","raw_affiliation_strings":["1 The Blavatnik School of Computer Science, 2Sackler Faculty of Exact Sciences, The Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978 and 3Computer Science Department, Technion - Israel Institute of Technology, Haifa 32000, Israel"],"affiliations":[{"raw_affiliation_string":"1 The Blavatnik School of Computer Science, 2Sackler Faculty of Exact Sciences, The Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978 and 3Computer Science Department, Technion - Israel Institute of Technology, Haifa 32000, Israel","institution_ids":["https://openalex.org/I174306211","https://openalex.org/I16391192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071192083","display_name":"Tomer Shlomi","orcid":"https://orcid.org/0000-0003-3491-5156"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]},{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Tomer Shlomi","raw_affiliation_strings":["1 The Blavatnik School of Computer Science, 2Sackler Faculty of Exact Sciences, The Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978 and 3Computer Science Department, Technion - Israel Institute of Technology, Haifa 32000, Israel"],"affiliations":[{"raw_affiliation_string":"1 The Blavatnik School of Computer Science, 2Sackler Faculty of Exact Sciences, The Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978 and 3Computer Science Department, Technion - Israel Institute of Technology, Haifa 32000, Israel","institution_ids":["https://openalex.org/I174306211","https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5080818955"],"corresponding_institution_ids":["https://openalex.org/I16391192","https://openalex.org/I174306211"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.3042,"has_fulltext":true,"cited_by_count":391,"citation_normalized_percentile":{"value":0.88385141,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"26","issue":"24","first_page":"3140","last_page":"3142"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.6481428146362305},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6049317121505737},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5667214393615723},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.5497562885284424},{"id":"https://openalex.org/keywords/flux","display_name":"Flux (metallurgy)","score":0.5493084192276001},{"id":"https://openalex.org/keywords/metabolic-flux-analysis","display_name":"Metabolic flux analysis","score":0.4504736363887787},{"id":"https://openalex.org/keywords/flux-balance-analysis","display_name":"Flux balance analysis","score":0.44465380907058716},{"id":"https://openalex.org/keywords/metabolic-activity","display_name":"Metabolic activity","score":0.4175507128238678},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3260733485221863},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.3103158473968506},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29816120862960815},{"id":"https://openalex.org/keywords/metabolism","display_name":"Metabolism","score":0.2058250606060028},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.20511996746063232},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.1724332571029663},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.141189306974411}],"concepts":[{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.6481428146362305},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6049317121505737},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5667214393615723},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.5497562885284424},{"id":"https://openalex.org/C68709404","wikidata":"https://www.wikidata.org/wiki/Q1134475","display_name":"Flux (metallurgy)","level":2,"score":0.5493084192276001},{"id":"https://openalex.org/C160941953","wikidata":"https://www.wikidata.org/wiki/Q6822342","display_name":"Metabolic flux analysis","level":3,"score":0.4504736363887787},{"id":"https://openalex.org/C167091322","wikidata":"https://www.wikidata.org/wiki/Q5463029","display_name":"Flux balance analysis","level":2,"score":0.44465380907058716},{"id":"https://openalex.org/C2993927895","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolic activity","level":2,"score":0.4175507128238678},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3260733485221863},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.3103158473968506},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29816120862960815},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.2058250606060028},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.20511996746063232},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.1724332571029663},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.141189306974411},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq602","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq602","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/24/3140/48855110/bioinformatics_26_24_3140.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21081510","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21081510","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq602","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq602","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/24/3140/48855110/bioinformatics_26_24_3140.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2172129062.pdf","grobid_xml":"https://content.openalex.org/works/W2172129062.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1996529795","https://openalex.org/W2012991302","https://openalex.org/W2028602190","https://openalex.org/W2059126588","https://openalex.org/W2088933296","https://openalex.org/W2098824895","https://openalex.org/W2100084634","https://openalex.org/W2104108767","https://openalex.org/W2116766270","https://openalex.org/W2137531873","https://openalex.org/W2154061034","https://openalex.org/W2162666840","https://openalex.org/W2163823651"],"related_works":["https://openalex.org/W1999460937","https://openalex.org/W2113329733","https://openalex.org/W2133150343","https://openalex.org/W1984242440","https://openalex.org/W1983989854","https://openalex.org/W2070388085","https://openalex.org/W2341681417","https://openalex.org/W2018212195","https://openalex.org/W2047334633","https://openalex.org/W2350881169"],"abstract_inverted_index":{"http://imat.cs.tau.ac.il/.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":41},{"year":2024,"cited_by_count":53},{"year":2023,"cited_by_count":38},{"year":2022,"cited_by_count":38},{"year":2021,"cited_by_count":30},{"year":2020,"cited_by_count":26},{"year":2019,"cited_by_count":39},{"year":2018,"cited_by_count":23},{"year":2017,"cited_by_count":17},{"year":2016,"cited_by_count":21},{"year":2015,"cited_by_count":23},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":9}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
