{"id":"https://openalex.org/W2124879102","doi":"https://doi.org/10.1093/bioinformatics/btq537","title":"MOBI: a web server to define and visualize structural mobility in NMR protein ensembles","display_name":"MOBI: a web server to define and visualize structural mobility in NMR protein ensembles","publication_year":2010,"publication_date":"2010-09-21","ids":{"openalex":"https://openalex.org/W2124879102","doi":"https://doi.org/10.1093/bioinformatics/btq537","mag":"2124879102","pmid":"https://pubmed.ncbi.nlm.nih.gov/20861031"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq537","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq537","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2916/48851842/bioinformatics_26_22_2916.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2916/48851842/bioinformatics_26_22_2916.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022019480","display_name":"Alberto J. M. Mart\u00edn","orcid":"https://orcid.org/0000-0002-6147-3325"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Alberto J. M. Martin","raw_affiliation_strings":["Department of Biology, University of Padova, viale G. Colombo 3, 35131 Padova, Italy","Department of Biology, University of Padova, Viale G. Colombo 3, 35131 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Padova, viale G. Colombo 3, 35131 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Department of Biology, University of Padova, Viale G. Colombo 3, 35131 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060625212","display_name":"Ian Walsh","orcid":"https://orcid.org/0000-0003-3994-5522"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ian Walsh","raw_affiliation_strings":["Department of Biology, University of Padova, viale G. Colombo 3, 35131 Padova, Italy","Department of Biology, University of Padova, Viale G. Colombo 3, 35131 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Padova, viale G. Colombo 3, 35131 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Department of Biology, University of Padova, Viale G. Colombo 3, 35131 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silvio C. E. Tosatto","raw_affiliation_strings":["Department of Biology, University of Padova, viale G. Colombo 3, 35131 Padova, Italy","Department of Biology, University of Padova, Viale G. Colombo 3, 35131 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Padova, viale G. Colombo 3, 35131 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Department of Biology, University of Padova, Viale G. Colombo 3, 35131 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5022019480"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.814,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.72343631,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"22","first_page":"2916","last_page":"2917"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8090999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8090999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.12210000306367874,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11809","display_name":"Advanced NMR Techniques and Applications","score":0.03530000150203705,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7174760103225708},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.5565987229347229},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.549802303314209},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4853293001651764},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4610643982887268},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4164668321609497},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.41612547636032104},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4118032455444336},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36519643664360046},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.26195383071899414},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1940445601940155},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1812940537929535},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16513359546661377},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13477244973182678}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7174760103225708},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.5565987229347229},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.549802303314209},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4853293001651764},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4610643982887268},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4164668321609497},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.41612547636032104},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4118032455444336},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36519643664360046},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.26195383071899414},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1940445601940155},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1812940537929535},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16513359546661377},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13477244973182678},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq537","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq537","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2916/48851842/bioinformatics_26_22_2916.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20861031","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20861031","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.829.6396","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.829.6396","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2010/09/21/bioinformatics.btq537.full.pdf","raw_type":"text"},{"id":"pmh:oai:www.research.unipd.it:11577/2428412","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/2428412","pdf_url":null,"source":{"id":"https://openalex.org/S4377196283","display_name":"Research Padua  Archive (University of Padua)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq537","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq537","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2916/48851842/bioinformatics_26_22_2916.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321966","display_name":"Universit\u00e0 degli Studi di Padova","ror":"https://ror.org/00240q980"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124879102.pdf","grobid_xml":"https://content.openalex.org/works/W2124879102.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1982250822","https://openalex.org/W1983497040","https://openalex.org/W2006003520","https://openalex.org/W2006192061","https://openalex.org/W2008708467","https://openalex.org/W2063163899","https://openalex.org/W2079345686","https://openalex.org/W2103982525","https://openalex.org/W2104673267","https://openalex.org/W2109872885","https://openalex.org/W2120772351","https://openalex.org/W2151216715","https://openalex.org/W2158349714","https://openalex.org/W2161151688","https://openalex.org/W2165969670","https://openalex.org/W2613328886"],"related_works":["https://openalex.org/W2013211627","https://openalex.org/W2032140021","https://openalex.org/W3038491195","https://openalex.org/W4353055924","https://openalex.org/W2732388178","https://openalex.org/W2806488847","https://openalex.org/W4361279638","https://openalex.org/W2121688928","https://openalex.org/W3126783617","https://openalex.org/W2069319199"],"abstract_inverted_index":{"MOTIVATION:":[0],"MOBI":[1,77,133],"is":[2,24,93],"a":[3,19,87,122],"web":[4],"server":[5,134],"for":[6,52,59,107,140],"the":[7,27,98,104,128],"identification":[8],"of":[9,31,49,57,70],"structurally":[10],"mobile":[11],"regions":[12,58],"in":[13,34,63,72,94,103,110],"NMR":[14,50,111],"protein":[15,64],"ensembles.":[16],"It":[17],"provides":[18],"binary":[20,89],"mobility":[21,51,71,90,119,129],"definition":[22,30,56,69,91,101],"that":[23,92],"analogous":[25],"to":[26,74,85],"commonly":[28],"used":[29,102],"intrinsic":[32,75,108],"disorder":[33,109],"X-ray":[35],"crystallographic":[36],"structures.":[37],"At":[38],"least":[39],"three":[40],"different":[41],"use":[42,142],"cases":[43],"can":[44],"be":[45],"envisaged:":[46],"(i)":[47],"visualization":[48],"structural":[53,79],"analysis;":[54],"(ii)":[55],"reliable":[60],"comparative":[61],"modelling":[62],"structure":[65],"prediction":[66],"and":[67,81,121,135],"(iii)":[68],"analogy":[73],"disorder.":[76],"uses":[78],"superposition":[80],"local":[82],"conformational":[83],"differences":[84],"derive":[86],"robust":[88],"excellent":[95],"agreement":[96],"with":[97],"manually":[99],"curated":[100],"CASP8":[105],"experiment":[106],"structure.":[112],"The":[113,132],"output":[114],"includes":[115],"mobility-coloured":[116],"PDB":[117],"files,":[118],"plots":[120],"FASTA":[123],"formatted":[124],"sequence":[125],"file":[126],"summarizing":[127],"results.":[130],"AVAILABILITY:":[131],"supplementary":[136],"methods":[137],"are":[138],"available":[139],"non-commercial":[141],"at":[143],"URL:":[144],"http://protein.bio.unipd.it/mobi/.":[145]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":5},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
