{"id":"https://openalex.org/W2159057411","doi":"https://doi.org/10.1093/bioinformatics/btq496","title":"XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography","display_name":"XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography","publication_year":2010,"publication_date":"2010-08-27","ids":{"openalex":"https://openalex.org/W2159057411","doi":"https://doi.org/10.1093/bioinformatics/btq496","mag":"2159057411","pmid":"https://pubmed.ncbi.nlm.nih.gov/20802209"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq496","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq496","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2786/48852497/bioinformatics_26_21_2786.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2786/48852497/bioinformatics_26_21_2786.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109247545","display_name":"J.R. Bilbao-Castro","orcid":null},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"J. R. Bilbao-Castro","raw_affiliation_strings":["1 Department of Computer Architecture and Electronics, Univ. de Almer\u00eda, 04120, Almer\u00eda, 2National Centre for Biotechnology (CSIC), Univ. Aut\u00f3noma de Madrid, 28049, Madrid and 3Department of Computer Architecture, Univ. M\u00e1laga, Campus Teatinos, 29071, M\u00e1laga, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Electronics, Univ. de Almer\u00eda, 04120, Almer\u00eda, 2National Centre for Biotechnology (CSIC), Univ. Aut\u00f3noma de Madrid, 28049, Madrid and 3Department of Computer Architecture, Univ. M\u00e1laga, Campus Teatinos, 29071, M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007117539","display_name":"Carlos \u00d3scar S. Sorzano","orcid":"https://orcid.org/0000-0002-9473-283X"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"C. O. S. Sorzano","raw_affiliation_strings":["1 Department of Computer Architecture and Electronics, Univ. de Almer\u00eda, 04120, Almer\u00eda, 2National Centre for Biotechnology (CSIC), Univ. Aut\u00f3noma de Madrid, 28049, Madrid and 3Department of Computer Architecture, Univ. M\u00e1laga, Campus Teatinos, 29071, M\u00e1laga, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Electronics, Univ. de Almer\u00eda, 04120, Almer\u00eda, 2National Centre for Biotechnology (CSIC), Univ. Aut\u00f3noma de Madrid, 28049, Madrid and 3Department of Computer Architecture, Univ. M\u00e1laga, Campus Teatinos, 29071, M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065759704","display_name":"I. Garc\u00eda","orcid":"https://orcid.org/0000-0002-1138-2118"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"I. Garc\u00eda","raw_affiliation_strings":["1 Department of Computer Architecture and Electronics, Univ. de Almer\u00eda, 04120, Almer\u00eda, 2National Centre for Biotechnology (CSIC), Univ. Aut\u00f3noma de Madrid, 28049, Madrid and 3Department of Computer Architecture, Univ. M\u00e1laga, Campus Teatinos, 29071, M\u00e1laga, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Electronics, Univ. de Almer\u00eda, 04120, Almer\u00eda, 2National Centre for Biotechnology (CSIC), Univ. Aut\u00f3noma de Madrid, 28049, Madrid and 3Department of Computer Architecture, Univ. M\u00e1laga, Campus Teatinos, 29071, M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044231334","display_name":"Jos\u00e9\u2010Jes\u00fas Fern\u00e1ndez","orcid":"https://orcid.org/0000-0003-2222-3355"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. J. Fern\u00e1ndez","raw_affiliation_strings":["1 Department of Computer Architecture and Electronics, Univ. de Almer\u00eda, 04120, Almer\u00eda, 2National Centre for Biotechnology (CSIC), Univ. Aut\u00f3noma de Madrid, 28049, Madrid and 3Department of Computer Architecture, Univ. M\u00e1laga, Campus Teatinos, 29071, M\u00e1laga, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Electronics, Univ. de Almer\u00eda, 04120, Almer\u00eda, 2National Centre for Biotechnology (CSIC), Univ. Aut\u00f3noma de Madrid, 28049, Madrid and 3Department of Computer Architecture, Univ. M\u00e1laga, Campus Teatinos, 29071, M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5109247545"],"corresponding_institution_ids":["https://openalex.org/I82767444"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4844,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.70968722,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"26","issue":"21","first_page":"2786","last_page":"2787"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6538705825805664},{"id":"https://openalex.org/keywords/noise-reduction","display_name":"Noise reduction","score":0.6430379748344421},{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.6416394710540771},{"id":"https://openalex.org/keywords/tomography","display_name":"Tomography","score":0.5503321886062622},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.5424405336380005},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5403724908828735},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5280471444129944},{"id":"https://openalex.org/keywords/microscope","display_name":"Microscope","score":0.4766572117805481},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.47007495164871216},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.4483446478843689},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3344762921333313},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20727801322937012},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.18964883685112},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18119698762893677},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.17731869220733643},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.1570417582988739},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.14236831665039062},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.05652371048927307}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6538705825805664},{"id":"https://openalex.org/C163294075","wikidata":"https://www.wikidata.org/wiki/Q581861","display_name":"Noise reduction","level":2,"score":0.6430379748344421},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.6416394710540771},{"id":"https://openalex.org/C163716698","wikidata":"https://www.wikidata.org/wiki/Q841267","display_name":"Tomography","level":2,"score":0.5503321886062622},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.5424405336380005},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5403724908828735},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5280471444129944},{"id":"https://openalex.org/C67649825","wikidata":"https://www.wikidata.org/wiki/Q196538","display_name":"Microscope","level":2,"score":0.4766572117805481},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.47007495164871216},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.4483446478843689},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3344762921333313},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20727801322937012},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.18964883685112},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18119698762893677},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.17731869220733643},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.1570417582988739},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.14236831665039062},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.05652371048927307}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055032","descriptor_name":"Electron Microscope Tomography","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055032","descriptor_name":"Electron Microscope Tomography","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055032","descriptor_name":"Electron Microscope Tomography","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq496","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq496","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2786/48852497/bioinformatics_26_21_2786.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20802209","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20802209","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq496","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq496","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2786/48852497/bioinformatics_26_21_2786.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2159057411.pdf","grobid_xml":"https://content.openalex.org/works/W2159057411.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1506774439","https://openalex.org/W1983923266","https://openalex.org/W2011751474","https://openalex.org/W2067191022","https://openalex.org/W2067987159","https://openalex.org/W2132562325","https://openalex.org/W2140092984","https://openalex.org/W2150876784","https://openalex.org/W4232716297","https://openalex.org/W4300282602","https://openalex.org/W6679971054"],"related_works":["https://openalex.org/W2166083489","https://openalex.org/W4252490265","https://openalex.org/W2064796645","https://openalex.org/W2133731969","https://openalex.org/W4243690219","https://openalex.org/W2093416691","https://openalex.org/W2418682142","https://openalex.org/W164151009","https://openalex.org/W2064636468","https://openalex.org/W2315952338"],"abstract_inverted_index":{"http://sites.google.com/site/xmsfilter/":[0]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}