{"id":"https://openalex.org/W2111936772","doi":"https://doi.org/10.1093/bioinformatics/btq445","title":"SPRINT: side-chain prediction inference toolbox for multistate protein design","display_name":"SPRINT: side-chain prediction inference toolbox for multistate protein design","publication_year":2010,"publication_date":"2010-08-04","ids":{"openalex":"https://openalex.org/W2111936772","doi":"https://doi.org/10.1093/bioinformatics/btq445","mag":"2111936772","pmid":"https://pubmed.ncbi.nlm.nih.gov/20685957"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq445","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq445","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051946088","display_name":"Menachem Fromer","orcid":"https://orcid.org/0000-0003-3749-4342"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["IL","US"],"is_corresponding":true,"raw_author_name":"Menachem Fromer","raw_affiliation_strings":["1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022114369","display_name":"Chen Yanover","orcid":"https://orcid.org/0000-0003-3663-4286"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Chen Yanover","raw_affiliation_strings":["1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103438664","display_name":"Amir Harel","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]},{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Amir Harel","raw_affiliation_strings":["1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089895803","display_name":"Ori Shachar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]},{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Ori Shachar","raw_affiliation_strings":["1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109588482","display_name":"Yair Weiss","orcid":null},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Yair Weiss","raw_affiliation_strings":["1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210089486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085924022","display_name":"Michal Linial","orcid":"https://orcid.org/0000-0002-9357-4526"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Michal Linial","raw_affiliation_strings":["1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel, 2Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA and 3Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210089486"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5051946088"],"corresponding_institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210089486"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3965,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.62734744,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"26","issue":"19","first_page":"2466","last_page":"2467"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sprint","display_name":"Sprint","score":0.8414402604103088},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6297303438186646},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6130695939064026},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.601136326789856},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5963601469993591},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4600955843925476},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.402619868516922},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.35199815034866333},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.330263614654541},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.28335458040237427},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.09886980056762695}],"concepts":[{"id":"https://openalex.org/C2776868573","wikidata":"https://www.wikidata.org/wiki/Q46855","display_name":"Sprint","level":2,"score":0.8414402604103088},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6297303438186646},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6130695939064026},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.601136326789856},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5963601469993591},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4600955843925476},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.402619868516922},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35199815034866333},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.330263614654541},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.28335458040237427},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.09886980056762695}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq445","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq445","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20685957","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20685957","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1969644422","https://openalex.org/W1985563952","https://openalex.org/W2027189612","https://openalex.org/W2037511678","https://openalex.org/W2046880148","https://openalex.org/W2046994420","https://openalex.org/W2064106707","https://openalex.org/W2145350307","https://openalex.org/W2154515666","https://openalex.org/W2155432846","https://openalex.org/W2168749685","https://openalex.org/W2172114588"],"related_works":["https://openalex.org/W2322263331","https://openalex.org/W1926641957","https://openalex.org/W2125815613","https://openalex.org/W4313472654","https://openalex.org/W2896007044","https://openalex.org/W2163814182","https://openalex.org/W1497573972","https://openalex.org/W2071659383","https://openalex.org/W1846253165","https://openalex.org/W2124122503"],"abstract_inverted_index":{"The":[0],"full":[1],"C++":[2],"source":[3],"code":[4],"for":[5],"SPRINT":[6],"can":[7],"be":[8],"freely":[9],"downloaded":[10],"from":[11],"http://www.protonet.cs.huji.ac.il/sprint.":[12]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
