{"id":"https://openalex.org/W2107493728","doi":"https://doi.org/10.1093/bioinformatics/btq281","title":"Manipulation of FASTQ data with Galaxy","display_name":"Manipulation of FASTQ data with Galaxy","publication_year":2010,"publication_date":"2010-06-18","ids":{"openalex":"https://openalex.org/W2107493728","doi":"https://doi.org/10.1093/bioinformatics/btq281","mag":"2107493728","pmid":"https://pubmed.ncbi.nlm.nih.gov/20562416"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq281","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq281","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1783/48853805/bioinformatics_26_14_1783.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1783/48853805/bioinformatics_26_14_1783.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075101770","display_name":"Daniel Blankenberg","orcid":"https://orcid.org/0000-0002-6833-9049"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Blankenberg","raw_affiliation_strings":["1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I150468666","https://openalex.org/I1344073410","https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103711548","display_name":"Assaf Gordon","orcid":null},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Assaf Gordon","raw_affiliation_strings":["1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I150468666","https://openalex.org/I1344073410","https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040846860","display_name":"Gregory Von Kuster","orcid":null},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gregory Von Kuster","raw_affiliation_strings":["1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I150468666","https://openalex.org/I1344073410","https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039419475","display_name":"Nathan Coraor","orcid":null},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan Coraor","raw_affiliation_strings":["1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I150468666","https://openalex.org/I1344073410","https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025611053","display_name":"James Taylor","orcid":"https://orcid.org/0000-0001-5079-840X"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James Taylor","raw_affiliation_strings":["1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I150468666","https://openalex.org/I1344073410","https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065292926","display_name":"Anton Nekrutenko","orcid":"https://orcid.org/0000-0002-5987-8032"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anton Nekrutenko","raw_affiliation_strings":["1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Huck Institute for the Life Sciences, Penn State University, University Park, PA 16803, 2 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724 and 3 Departments of Biology and Mathematics and Computer Science, Emory University, Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I150468666","https://openalex.org/I1344073410","https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":null,"display_name":"the Galaxy Team","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"the Galaxy Team","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5025611053","https://openalex.org/A5065292926"],"corresponding_institution_ids":["https://openalex.org/I130769515","https://openalex.org/I1344073410","https://openalex.org/I150468666","https://openalex.org/I2750212522"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":10.1656,"has_fulltext":false,"cited_by_count":710,"citation_normalized_percentile":{"value":0.98891931,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"14","first_page":"1783","last_page":"1785"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9800999760627747,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.8847784996032715},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8272309303283691},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8001145720481873},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.594508945941925},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.5148993730545044},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4384942650794983},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4379065930843353},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.42920973896980286},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4090225398540497},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3216218650341034},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17555907368659973}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.8847784996032715},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8272309303283691},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8001145720481873},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.594508945941925},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.5148993730545044},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4384942650794983},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4379065930843353},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.42920973896980286},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4090225398540497},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3216218650341034},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17555907368659973},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq281","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq281","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1783/48853805/bioinformatics_26_14_1783.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20562416","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20562416","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repository.cshl.edu:15357","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Paper"},{"id":"pmh:oai:pubmedcentral.nih.gov:2894519","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2894519","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq281","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq281","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/14/1783/48853805/bioinformatics_26_14_1783.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2107493728.pdf","grobid_xml":"https://content.openalex.org/works/W2107493728.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W1518437340","https://openalex.org/W1583240815","https://openalex.org/W2113565103","https://openalex.org/W2117608012"],"related_works":["https://openalex.org/W4231704780","https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W2083794993","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W2557718140","https://openalex.org/W67092138","https://openalex.org/W3005935371","https://openalex.org/W4225687299"],"abstract_inverted_index":{"This":[0],"open-source":[1],"toolset":[2],"was":[3],"implemented":[4],"in":[5,34],"Python":[6],"and":[7],"has":[8],"been":[9],"integrated":[10],"into":[11],"the":[12,29],"online":[13],"data":[14],"analysis":[15],"platform":[16],"Galaxy":[17],"(public":[18],"web":[19],"access:":[20],"http://usegalaxy.org;":[21],"download:":[22],"http://getgalaxy.org).":[23],"Two":[24],"short":[25],"movies":[26],"that":[27],"highlight":[28],"functionality":[30],"of":[31,44,51],"tools":[32],"described":[33],"this":[35,45],"manuscript":[36],"as":[37,39],"well":[38],"results":[40],"from":[41],"testing":[42],"components":[43],"tool":[46],"suite":[47],"against":[48],"a":[49],"set":[50],"previously":[52],"published":[53],"files":[54],"are":[55],"available":[56],"at":[57],"http://usegalaxy.org/u/dan/p/fastq":[58]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":26},{"year":2024,"cited_by_count":36},{"year":2023,"cited_by_count":30},{"year":2022,"cited_by_count":56},{"year":2021,"cited_by_count":74},{"year":2020,"cited_by_count":66},{"year":2019,"cited_by_count":51},{"year":2018,"cited_by_count":64},{"year":2017,"cited_by_count":61},{"year":2016,"cited_by_count":61},{"year":2015,"cited_by_count":55},{"year":2014,"cited_by_count":48},{"year":2013,"cited_by_count":39},{"year":2012,"cited_by_count":21}],"updated_date":"2026-04-26T08:31:28.666265","created_date":"2025-10-10T00:00:00"}