{"id":"https://openalex.org/W2169360734","doi":"https://doi.org/10.1093/bioinformatics/btq063","title":"Standard virtual biological parts: a repository of modular modeling components for synthetic biology","display_name":"Standard virtual biological parts: a repository of modular modeling components for synthetic biology","publication_year":2010,"publication_date":"2010-02-16","ids":{"openalex":"https://openalex.org/W2169360734","doi":"https://doi.org/10.1093/bioinformatics/btq063","mag":"2169360734","pmid":"https://pubmed.ncbi.nlm.nih.gov/20160009"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq063","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/7/925/48854217/bioinformatics_26_7_925.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/7/925/48854217/bioinformatics_26_7_925.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090837240","display_name":"Michael T. Cooling","orcid":"https://orcid.org/0000-0002-3417-0177"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]},{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["GB","NZ"],"is_corresponding":true,"raw_author_name":"M. T. Cooling","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK","institution_ids":["https://openalex.org/I154130895","https://openalex.org/I84884186","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045650204","display_name":"Vincent Rouilly","orcid":"https://orcid.org/0000-0003-3704-9310"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]},{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["GB","NZ"],"is_corresponding":false,"raw_author_name":"V. Rouilly","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK","institution_ids":["https://openalex.org/I154130895","https://openalex.org/I84884186","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028639846","display_name":"G\u00f6ksel M\u0131s\u0131rl\u0131","orcid":"https://orcid.org/0000-0002-2454-7188"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB","NZ"],"is_corresponding":false,"raw_author_name":"G. Misirli","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK","institution_ids":["https://openalex.org/I154130895","https://openalex.org/I84884186","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056416373","display_name":"James R. Lawson","orcid":"https://orcid.org/0000-0001-7983-4443"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]},{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB","NZ"],"is_corresponding":false,"raw_author_name":"J. Lawson","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK","institution_ids":["https://openalex.org/I154130895","https://openalex.org/I84884186","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103160325","display_name":"Tingting Yu","orcid":"https://orcid.org/0000-0002-4158-4220"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]},{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB","NZ"],"is_corresponding":false,"raw_author_name":"T. Yu","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK","institution_ids":["https://openalex.org/I154130895","https://openalex.org/I84884186","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040063046","display_name":"Jennifer Hallinan","orcid":"https://orcid.org/0000-0002-2860-1022"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]},{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["GB","NZ"],"is_corresponding":false,"raw_author_name":"J. Hallinan","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK","institution_ids":["https://openalex.org/I154130895","https://openalex.org/I84884186","https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089978830","display_name":"Anil Wipat","orcid":"https://orcid.org/0000-0001-7310-4191"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]},{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["GB","NZ"],"is_corresponding":false,"raw_author_name":"A. Wipat","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, 2 Department of Bioengineering, Imperial College London, London SW7 2AZ and 3 School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK","institution_ids":["https://openalex.org/I154130895","https://openalex.org/I84884186","https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5090837240"],"corresponding_institution_ids":["https://openalex.org/I154130895","https://openalex.org/I47508984","https://openalex.org/I84884186"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.3373,"has_fulltext":true,"cited_by_count":95,"citation_normalized_percentile":{"value":0.95162662,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"7","first_page":"925","last_page":"931"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9764000177383423,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7630629539489746},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.7214241623878479},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6853044033050537},{"id":"https://openalex.org/keywords/workspace","display_name":"Workspace","score":0.6286097764968872},{"id":"https://openalex.org/keywords/modularity","display_name":"Modularity (biology)","score":0.6054277420043945},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.6024522185325623},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.5096700191497803},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.4203246831893921},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2056049406528473},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15139171481132507},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11119812726974487},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10044470429420471}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7630629539489746},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.7214241623878479},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6853044033050537},{"id":"https://openalex.org/C58581272","wikidata":"https://www.wikidata.org/wiki/Q12741163","display_name":"Workspace","level":3,"score":0.6286097764968872},{"id":"https://openalex.org/C2779478453","wikidata":"https://www.wikidata.org/wiki/Q6889748","display_name":"Modularity (biology)","level":2,"score":0.6054277420043945},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.6024522185325623},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.5096700191497803},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.4203246831893921},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2056049406528473},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15139171481132507},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11119812726974487},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10044470429420471},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C90509273","wikidata":"https://www.wikidata.org/wiki/Q11012","display_name":"Robot","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq063","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/7/925/48854217/bioinformatics_26_7_925.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20160009","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20160009","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:researchspace.auckland.ac.nz:2292/7559","is_oa":false,"landing_page_url":"https://hdl.handle.net/2292/7559","pdf_url":null,"source":{"id":"https://openalex.org/S7407055463","display_name":"ResearchSpace (University of Auckland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I154130895","host_organization_name":"University of Auckland","host_organization_lineage":["https://openalex.org/I154130895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq063","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/7/925/48854217/bioinformatics_26_7_925.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320240","display_name":"Research Councils UK","ror":"https://ror.org/00dq2kk65"},{"id":"https://openalex.org/F4320330087","display_name":"Maurice Wilkins Centre for Molecular Biodiscovery","ror":"https://ror.org/0327mmx61"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2169360734.pdf","grobid_xml":"https://content.openalex.org/works/W2169360734.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1513962738","https://openalex.org/W1541343226","https://openalex.org/W1544529442","https://openalex.org/W1553203915","https://openalex.org/W1936333455","https://openalex.org/W1980699805","https://openalex.org/W1983849957","https://openalex.org/W2040140863","https://openalex.org/W2045919784","https://openalex.org/W2047480488","https://openalex.org/W2047882868","https://openalex.org/W2051266530","https://openalex.org/W2064791677","https://openalex.org/W2073151461","https://openalex.org/W2087308849","https://openalex.org/W2091731123","https://openalex.org/W2107062718","https://openalex.org/W2130912501","https://openalex.org/W2139768072","https://openalex.org/W2140643808","https://openalex.org/W2147306790","https://openalex.org/W2148329459","https://openalex.org/W2150281351","https://openalex.org/W2161749893","https://openalex.org/W2170122529","https://openalex.org/W4285719527","https://openalex.org/W6679500670","https://openalex.org/W6681837362","https://openalex.org/W6683800640"],"related_works":["https://openalex.org/W1992503747","https://openalex.org/W2297768894","https://openalex.org/W2378076731","https://openalex.org/W3109014690","https://openalex.org/W2122405502","https://openalex.org/W2114254072","https://openalex.org/W1531253727","https://openalex.org/W2127721729","https://openalex.org/W2366669483","https://openalex.org/W1985973698"],"abstract_inverted_index":{"MOTIVATION:":[0],"Fabrication":[1],"of":[2,26,35,42,63,81,90,111,132],"synthetic":[3],"biological":[4,27,74],"systems":[5,75],"is":[6,93,106,156],"greatly":[7],"enhanced":[8],"by":[9,95],"incorporating":[10],"engineering":[11],"design":[12],"principles":[13],"and":[14,122,127,153],"techniques":[15],"such":[16],"as":[17,109,159],"computer-aided":[18],"design.":[19,52],"To":[20],"this":[21,91,167],"end,":[22],"the":[23,40,77,82,117,124,130,143,179],"ongoing":[24],"standardization":[25],"parts":[28,38],"presents":[29],"an":[30,56,150],"opportunity":[31],"to":[32,49,71,115,120,129],"develop":[33],"libraries":[34],"standard":[36],"virtual":[37],"in":[39,178],"form":[41],"mathematical":[43],"models":[44,65,125,176],"that":[45,66],"can":[46,67,169,181],"be":[47,69,170,182],"combined":[48],"inform":[50],"system":[51],"RESULTS:":[53],"We":[54,113],"present":[55],"online":[57,108],"Repository,":[58],"populated":[59],"with":[60,149],"a":[61,154],"collection":[62],"standardized":[64],"readily":[68],"recombined":[70],"model":[72,85],"different":[73],"using":[76],"inherent":[78],"modularity":[79],"support":[80],"CellML":[83],"1.1":[84],"exchange":[86],"format.":[87],"The":[88,104,162,174],"applicability":[89],"approach":[92],"demonstrated":[94],"modeling":[96],"gold-medal":[97],"winning":[98],"iGEM":[99],"machines.":[100],"AVAILABILITY":[101],"AND":[102],"IMPLEMENTATION:":[103],"Repository":[105,131],"available":[107,158],"part":[110],"http://models.cellml.org.":[112],"hope":[114],"stimulate":[116],"worldwide":[118],"community":[119],"reuse":[121],"extend":[123],"therein,":[126],"contribute":[128],"Standard":[133],"Virtual":[134],"Parts":[135],"thus":[136],"founded.":[137],"Systems":[138,144,164],"Model":[139,145,165],"architecture":[140],"information":[141],"for":[142],"described":[146],"here,":[147],"along":[148],"additional":[151],"example":[152,163,180],"tutorial,":[155],"also":[157],"Supplementary":[160],"information.":[161],"from":[166],"manuscript":[168],"found":[171,183],"at":[172,184],"http://models.cellml.org/workspace/bugbuster.":[173],"Template":[175],"used":[177],"http://models.cellml.org/workspace/SVP_Templates200906.":[185]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}