{"id":"https://openalex.org/W2137550342","doi":"https://doi.org/10.1093/bioinformatics/btp709","title":"jORCA: easily integrating bioinformatics Web Services","display_name":"jORCA: easily integrating bioinformatics Web Services","publication_year":2010,"publication_date":"2010-01-03","ids":{"openalex":"https://openalex.org/W2137550342","doi":"https://doi.org/10.1093/bioinformatics/btp709","mag":"2137550342"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp709","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp709","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/4/553/48854096/bioinformatics_26_4_553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/4/553/48854096/bioinformatics_26_4_553.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012590801","display_name":"Victoria Mart\u00edn-Requena","orcid":null},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Victoria Mart\u00edn-Requena","raw_affiliation_strings":["Computer Architecture Department, University of Malaga, 29071 M\u00e1laga, Spain","Computer Architecture Department, University of Malaga, 29071 Malaga, Spain"],"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29071 M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]},{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29071 Malaga, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039051926","display_name":"Javier R\u00edos","orcid":null},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Javier R\u00edos","raw_affiliation_strings":["Computer Architecture Department, University of Malaga, 29071 M\u00e1laga, Spain","Computer Architecture Department, University of Malaga, 29071 Malaga, Spain"],"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29071 M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]},{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29071 Malaga, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100891796","display_name":"M.M. Garc\u00eda","orcid":null},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Maximiliano Garc\u00eda","raw_affiliation_strings":["Computer Architecture Department, University of Malaga, 29071 M\u00e1laga, Spain","Computer Architecture Department, University of Malaga, 29071 Malaga, Spain"],"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29071 M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]},{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29071 Malaga, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102433610","display_name":"Sergio Ram\u00edrez","orcid":null},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Sergio Ram\u00edrez","raw_affiliation_strings":["Computer Architecture Department, University of Malaga, 29071 M\u00e1laga, Spain","Computer Architecture Department, University of Malaga, 29071 Malaga, Spain"],"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29071 M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]},{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29071 Malaga, Spain","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082510742","display_name":"Oswaldo Trelles","orcid":"https://orcid.org/0000-0003-1554-8987"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Oswaldo Trelles","raw_affiliation_strings":["Computer Architecture Department, University of Malaga, 29071 M\u00e1laga, Spain","Computer Architecture Department, University of Malaga, 29071 Malaga, Spain"],"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29071 M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]},{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29071 Malaga, Spain","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5012590801"],"corresponding_institution_ids":["https://openalex.org/I82767444"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":13.3374,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.98438832,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"4","first_page":"553","last_page":"559"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7961138486862183},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6889402866363525},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6677642464637756},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4167185425758362},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.4143241345882416},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.28219079971313477}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7961138486862183},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6889402866363525},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6677642464637756},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4167185425758362},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.4143241345882416},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.28219079971313477}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/btp709","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp709","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/4/553/48854096/bioinformatics_26_4_553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp709","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp709","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/4/553/48854096/bioinformatics_26_4_553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2137550342.pdf","grobid_xml":"https://content.openalex.org/works/W2137550342.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1578304052","https://openalex.org/W1973523148","https://openalex.org/W2002438471","https://openalex.org/W2009569628","https://openalex.org/W2020360970","https://openalex.org/W2067360806","https://openalex.org/W2071286514","https://openalex.org/W2107523227","https://openalex.org/W2108781775","https://openalex.org/W2117724905","https://openalex.org/W2120772351","https://openalex.org/W2142110984","https://openalex.org/W2143746383","https://openalex.org/W2161679242","https://openalex.org/W2168103533","https://openalex.org/W2169826929","https://openalex.org/W2282891966","https://openalex.org/W2974569255","https://openalex.org/W4408762729","https://openalex.org/W6634607425","https://openalex.org/W6768195467"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2314289140","https://openalex.org/W2100364494","https://openalex.org/W2970943381","https://openalex.org/W2469579675","https://openalex.org/W3199935553","https://openalex.org/W2066998448","https://openalex.org/W2909116240","https://openalex.org/W1626437319","https://openalex.org/W4252103905"],"abstract_inverted_index":{"Abstract":[0],"Motivation:":[1],"Web":[2,45,81,167],"services":[3,135],"technology":[4],"is":[5,27,42,71,106,116,169,209,242],"becoming":[6],"the":[7,21,92,108,111,142,193],"option":[8],"of":[9,20,24,39,80,91,103,110,128,134,147,160,165,177],"choice":[10],"to":[11,66,172],"deploy":[12],"bioinformatics":[13,166],"tools":[14],"that":[15,28,43,123],"are":[16,187,252],"universally":[17],"available.":[18],"One":[19],"major":[22],"strengths":[23],"this":[25,40,62],"approach":[26,41],"it":[29,115],"supports":[30],"machine-to-machine":[31],"interoperability":[32],"over":[33],"a":[34,37,64,72,88,117,125,154,174],"network.":[35],"However,":[36],"weakness":[38],"various":[44],"Services":[46,168],"differ":[47],"in":[48,136,207],"their":[49,57],"definition":[50],"and":[51,59,100,120,158,180,184,202,227,231],"invocation":[52,133],"protocols,":[53],"as":[54,56],"well":[55],"communication":[58],"data":[60,144,251],"formats\u2014and":[61],"presents":[63],"barrier":[65],"service":[67,98],"interoperability.":[68],"Results:":[69],"jORCA":[70,112,182,203,216],"desktop":[73],"client":[74],"aimed":[75],"at":[76,107,190,254],"facilitating":[77],"seamless":[78],"integration":[79,164],"Services.":[82],"It":[83],"does":[84],"so":[85],"by":[86],"making":[87],"uniform":[89],"representation":[90],"different":[93],"web":[94],"resources,":[95],"supporting":[96],"scalable":[97],"discovery,":[99],"automatic":[101],"composition":[102],"workflows.":[104],"Usability":[105],"top":[109],"agenda;":[113],"thus":[114],"highly":[118],"customizable":[119],"extensible":[121],"application":[122],"accommodates":[124],"broad":[126],"range":[127,176],"user":[129],"skills":[130],"featuring":[131],"double-click":[132],"conjunction":[137],"with":[138],"advanced":[139],"execution-control,":[140],"on":[141],"fly":[143],"standardization,":[145],"extensibility":[146],"viewer":[148],"plug-ins,":[149],"drag-and-drop":[150],"editing":[151],"capabilities,":[152],"plus":[153],"file-based":[155],"browsing":[156],"style":[157],"organization":[159],"favourite":[161],"tools.":[162],"The":[163],"made":[170],"easier":[171],"support":[173],"wider":[175],"users.":[178],"Availability":[179],"Implementation:":[181],"binaries":[183],"extended":[185],"documentation":[186],"freely":[188],"available":[189,210,253],"http://www.bitlab-es.com/jorca":[191],"under":[192,211,220],"Creative":[194],"Commons":[195],"Attribution-No":[196],"Derivative":[197],"Works":[198],"2.5":[199],"Spain":[200],"License":[201],"source":[204],"code":[205],"(implemented":[206],"Java)":[208],"request.":[212],"(GPL":[213],"v3":[214],"license).":[215],"has":[217],"been":[218],"tested":[219],"UNIX":[221],"(Fedora":[222],"11,":[223],"open":[224],"SUSE":[225],"11":[226],"Ubuntu":[228],"8.1),":[229],"MS-Windows":[230],"Mac":[232],"OS":[233],"10.5":[234],"operating":[235],"systems.":[236],"Java":[237],"VM":[238],"version":[239],"1.6.0":[240],"later":[241],"required.":[243],"Contact:":[244],"ots@uma.es":[245],"or":[246],"vickymr@uma.es":[247],"Supplementary":[248,250],"information:":[249],"Bioinformatics":[255],"online.":[256]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":6}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
