{"id":"https://openalex.org/W2154036437","doi":"https://doi.org/10.1093/bioinformatics/btp651","title":"AQUA: automated quality improvement for multiple sequence alignments","display_name":"AQUA: automated quality improvement for multiple sequence alignments","publication_year":2009,"publication_date":"2009-11-19","ids":{"openalex":"https://openalex.org/W2154036437","doi":"https://doi.org/10.1093/bioinformatics/btp651","mag":"2154036437","pmid":"https://pubmed.ncbi.nlm.nih.gov/19926669"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp651","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp651","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/263/48857213/bioinformatics_26_2_263.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/263/48857213/bioinformatics_26_2_263.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053585995","display_name":"Jean Muller","orcid":"https://orcid.org/0000-0002-7682-559X"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jean Muller","raw_affiliation_strings":["1 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany, 2 D\u00e9partement de Biologie et G\u00e9nomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, (CNRS/INSERM/ULP), BP 10142, 67404 Illkirch Cedex and 3 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany, 2 D\u00e9partement de Biologie et G\u00e9nomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, (CNRS/INSERM/ULP), BP 10142, 67404 Illkirch Cedex and 3 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061955804","display_name":"Christopher J. Creevey","orcid":"https://orcid.org/0000-0001-7183-1555"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christopher J. Creevey","raw_affiliation_strings":["1 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany, 2 D\u00e9partement de Biologie et G\u00e9nomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, (CNRS/INSERM/ULP), BP 10142, 67404 Illkirch Cedex and 3 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany, 2 D\u00e9partement de Biologie et G\u00e9nomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, (CNRS/INSERM/ULP), BP 10142, 67404 Illkirch Cedex and 3 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039921905","display_name":"Julie Thompson","orcid":"https://orcid.org/0000-0003-4893-3478"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julie D. Thompson","raw_affiliation_strings":["1 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany, 2 D\u00e9partement de Biologie et G\u00e9nomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, (CNRS/INSERM/ULP), BP 10142, 67404 Illkirch Cedex and 3 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany, 2 D\u00e9partement de Biologie et G\u00e9nomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, (CNRS/INSERM/ULP), BP 10142, 67404 Illkirch Cedex and 3 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018363483","display_name":"Detlev Arendt","orcid":"https://orcid.org/0000-0001-7833-050X"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Detlev Arendt","raw_affiliation_strings":["1 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany, 2 D\u00e9partement de Biologie et G\u00e9nomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, (CNRS/INSERM/ULP), BP 10142, 67404 Illkirch Cedex and 3 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany, 2 D\u00e9partement de Biologie et G\u00e9nomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, (CNRS/INSERM/ULP), BP 10142, 67404 Illkirch Cedex and 3 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074309419","display_name":"Peer Bork","orcid":"https://orcid.org/0000-0002-2627-833X"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peer Bork","raw_affiliation_strings":["1 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany, 2 D\u00e9partement de Biologie et G\u00e9nomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, (CNRS/INSERM/ULP), BP 10142, 67404 Illkirch Cedex and 3 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany, 2 D\u00e9partement de Biologie et G\u00e9nomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, (CNRS/INSERM/ULP), BP 10142, 67404 Illkirch Cedex and 3 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","institution_ids":["https://openalex.org/I4210138560"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5053585995"],"corresponding_institution_ids":["https://openalex.org/I4210138560"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4435,"has_fulltext":false,"cited_by_count":60,"citation_normalized_percentile":{"value":0.81401858,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"2","first_page":"263","last_page":"265"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7792249917984009},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6673490405082703},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6641677618026733},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6135434508323669},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.59765625},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5381463766098022},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.5073620676994324},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.4968126118183136},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.4883560836315155},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.4741513133049011},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4617841839790344},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4568129777908325},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.43611258268356323},{"id":"https://openalex.org/keywords/source-lines-of-code","display_name":"Source lines of code","score":0.41508013010025024},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.39288151264190674},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3347952365875244},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1681583821773529},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.13357746601104736},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.08169552683830261},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07939267158508301}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7792249917984009},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6673490405082703},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6641677618026733},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6135434508323669},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.59765625},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5381463766098022},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.5073620676994324},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.4968126118183136},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.4883560836315155},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.4741513133049011},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4617841839790344},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4568129777908325},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.43611258268356323},{"id":"https://openalex.org/C199519371","wikidata":"https://www.wikidata.org/wiki/Q942695","display_name":"Source lines of code","level":3,"score":0.41508013010025024},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.39288151264190674},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3347952365875244},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1681583821773529},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.13357746601104736},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.08169552683830261},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07939267158508301},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp651","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp651","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/263/48857213/bioinformatics_26_2_263.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19926669","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19926669","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp651","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp651","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/263/48857213/bioinformatics_26_2_263.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154036437.pdf","grobid_xml":"https://content.openalex.org/works/W2154036437.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1978231651","https://openalex.org/W2001573278","https://openalex.org/W2017777683","https://openalex.org/W2030750720","https://openalex.org/W2096641211","https://openalex.org/W2105006906","https://openalex.org/W2111551123","https://openalex.org/W2119362018","https://openalex.org/W2120772351","https://openalex.org/W2127122014","https://openalex.org/W2132926880","https://openalex.org/W2136570298","https://openalex.org/W2140872496","https://openalex.org/W2141411672","https://openalex.org/W2148600016","https://openalex.org/W2154364831","https://openalex.org/W2156563976","https://openalex.org/W2171213294"],"related_works":["https://openalex.org/W2546377002","https://openalex.org/W3169119567","https://openalex.org/W2046541848","https://openalex.org/W270927586","https://openalex.org/W88386512","https://openalex.org/W2999281421","https://openalex.org/W2104474107","https://openalex.org/W2112504441","https://openalex.org/W3185509911","https://openalex.org/W2154036437"],"abstract_inverted_index":{"AQUA":[0],"is":[1,16],"implemented":[2],"in":[3,7],"Tcl/Tk":[4],"and":[5,26],"runs":[6],"command":[8],"line":[9],"on":[10],"all":[11],"platforms.":[12],"The":[13],"source":[14],"code":[15],"available":[17,30],"under":[18],"the":[19],"GNU":[20],"GPL":[21],"license.":[22],"Source":[23],"code,":[24],"README":[25],"Supplementary":[27],"data":[28],"are":[29],"at":[31],"http://www.bork.embl.de/Docu/AQUA.":[32]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
