{"id":"https://openalex.org/W2146457918","doi":"https://doi.org/10.1093/bioinformatics/btp643","title":"MADS+: discovery of differential splicing events from Affymetrix exon junction array data","display_name":"MADS+: discovery of differential splicing events from Affymetrix exon junction array data","publication_year":2009,"publication_date":"2009-11-17","ids":{"openalex":"https://openalex.org/W2146457918","doi":"https://doi.org/10.1093/bioinformatics/btp643","mag":"2146457918","pmid":"https://pubmed.ncbi.nlm.nih.gov/19933160"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp643","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp643","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/268/48857143/bioinformatics_26_2_268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/268/48857143/bioinformatics_26_2_268.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053962492","display_name":"Shihao Shen","orcid":"https://orcid.org/0000-0003-1012-1028"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shihao Shen","raw_affiliation_strings":["1 Department of Biostatistics, University of Iowa, Iowa City, IA, 2 Cell and Molecular Biology Graduate Group, 3 Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, 4 Department of Internal Medicine and 5 Department of Biomedical Engineering, University of Iowa, Iowa City, IA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, University of Iowa, Iowa City, IA, 2 Cell and Molecular Biology Graduate Group, 3 Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, 4 Department of Internal Medicine and 5 Department of Biomedical Engineering, University of Iowa, Iowa City, IA, USA","institution_ids":["https://openalex.org/I126307644","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062220124","display_name":"Claude C. Warzecha","orcid":"https://orcid.org/0000-0002-3659-2867"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Claude C. Warzecha","raw_affiliation_strings":["1 Department of Biostatistics, University of Iowa, Iowa City, IA, 2 Cell and Molecular Biology Graduate Group, 3 Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, 4 Department of Internal Medicine and 5 Department of Biomedical Engineering, University of Iowa, Iowa City, IA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, University of Iowa, Iowa City, IA, 2 Cell and Molecular Biology Graduate Group, 3 Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, 4 Department of Internal Medicine and 5 Department of Biomedical Engineering, University of Iowa, Iowa City, IA, USA","institution_ids":["https://openalex.org/I126307644","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028064851","display_name":"Russ P. Carstens","orcid":"https://orcid.org/0000-0002-8083-0412"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russ P. Carstens","raw_affiliation_strings":["1 Department of Biostatistics, University of Iowa, Iowa City, IA, 2 Cell and Molecular Biology Graduate Group, 3 Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, 4 Department of Internal Medicine and 5 Department of Biomedical Engineering, University of Iowa, Iowa City, IA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, University of Iowa, Iowa City, IA, 2 Cell and Molecular Biology Graduate Group, 3 Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, 4 Department of Internal Medicine and 5 Department of Biomedical Engineering, University of Iowa, Iowa City, IA, USA","institution_ids":["https://openalex.org/I126307644","https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087568641","display_name":"Yi Xing","orcid":"https://orcid.org/0000-0001-9257-7613"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Xing","raw_affiliation_strings":["1 Department of Biostatistics, University of Iowa, Iowa City, IA, 2 Cell and Molecular Biology Graduate Group, 3 Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, 4 Department of Internal Medicine and 5 Department of Biomedical Engineering, University of Iowa, Iowa City, IA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, University of Iowa, Iowa City, IA, 2 Cell and Molecular Biology Graduate Group, 3 Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, 4 Department of Internal Medicine and 5 Department of Biomedical Engineering, University of Iowa, Iowa City, IA, USA","institution_ids":["https://openalex.org/I126307644","https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5053962492"],"corresponding_institution_ids":["https://openalex.org/I126307644","https://openalex.org/I79576946"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4828,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.81857786,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"2","first_page":"268","last_page":"269"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.6181953549385071},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.5609933137893677},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5351665019989014},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5065089464187622},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.41034963726997375},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37152066826820374},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2727060914039612}],"concepts":[{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.6181953549385071},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.5609933137893677},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5351665019989014},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5065089464187622},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.41034963726997375},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37152066826820374},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2727060914039612},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020133","descriptor_name":"Reverse Transcriptase Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020133","descriptor_name":"Reverse Transcriptase Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020133","descriptor_name":"Reverse Transcriptase Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btp643","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp643","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/268/48857143/bioinformatics_26_2_268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19933160","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19933160","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.957.8707","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.957.8707","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2009/11/17/bioinformatics.btp643.full.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2804303","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2804303","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp643","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp643","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/268/48857143/bioinformatics_26_2_268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6600000262260437,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[{"id":"https://openalex.org/G5041868764","display_name":null,"funder_award_id":"UL1 RR024979","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5668428409","display_name":null,"funder_award_id":"GM088809","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7094022445","display_name":null,"funder_award_id":"RR024979","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320313698","display_name":"Edward Mallinckrodt, Jr. Foundation","ror":"https://ror.org/035yf7a66"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146457918.pdf","grobid_xml":"https://content.openalex.org/works/W2146457918.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1983737095","https://openalex.org/W2038437697","https://openalex.org/W2103021978","https://openalex.org/W2110103300","https://openalex.org/W2111788381","https://openalex.org/W2117949279","https://openalex.org/W2152129478","https://openalex.org/W2153519169","https://openalex.org/W2165781226"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2130439870","https://openalex.org/W2151954452","https://openalex.org/W178291922","https://openalex.org/W2000278701","https://openalex.org/W2055681276"],"abstract_inverted_index":{"MADS+":[0],"scripts,":[1],"documentations":[2],"and":[3],"annotation":[4],"files":[5],"are":[6],"available":[7],"at":[8],"http://www.medicine.uiowa.edu/Labs/Xing/MADSplus/.":[9]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
