{"id":"https://openalex.org/W2157716612","doi":"https://doi.org/10.1093/bioinformatics/btp634","title":"PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks","display_name":"PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks","publication_year":2009,"publication_date":"2009-11-13","ids":{"openalex":"https://openalex.org/W2157716612","doi":"https://doi.org/10.1093/bioinformatics/btp634","mag":"2157716612","pmid":"https://pubmed.ncbi.nlm.nih.gov/19914922"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp634","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp634","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/275/48857427/bioinformatics_26_2_275.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/275/48857427/bioinformatics_26_2_275.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100325907","display_name":"Fei Li","orcid":"https://orcid.org/0000-0003-4895-7330"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Li","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China"],"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100649898","display_name":"Peng Li","orcid":"https://orcid.org/0000-0001-9432-8995"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Li","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China"],"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075527355","display_name":"Wenjian Xu","orcid":"https://orcid.org/0000-0002-4304-3479"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjian Xu","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China"],"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101645557","display_name":"Yuxing Peng","orcid":"https://orcid.org/0000-0002-8223-5588"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxing Peng","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China"],"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045958734","display_name":"Xiaochen Bo","orcid":"https://orcid.org/0000-0003-1911-7922"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaochen Bo","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China"],"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036267807","display_name":"Shengqi Wang","orcid":"https://orcid.org/0000-0002-6368-8450"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengqi Wang","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China"],"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, 27 Taiping Road, Beijing 100850 and 2 National Laboratory for Parallel & Distributed Processing, Department of Computer Science, National University of Defense Technology, Changsha 410073, Hunan, China","institution_ids":["https://openalex.org/I170215575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100325907"],"corresponding_institution_ids":["https://openalex.org/I170215575"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.348,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.80454354,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"2","first_page":"275","last_page":"277"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.559869647026062},{"id":"https://openalex.org/keywords/perturbation","display_name":"Perturbation (astronomy)","score":0.5593445897102356},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.43590807914733887},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41881901025772095},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3569904863834381},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.323703408241272},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21520835161209106},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.15451690554618835},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14523157477378845}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.559869647026062},{"id":"https://openalex.org/C177918212","wikidata":"https://www.wikidata.org/wiki/Q803623","display_name":"Perturbation (astronomy)","level":2,"score":0.5593445897102356},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.43590807914733887},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41881901025772095},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3569904863834381},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.323703408241272},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21520835161209106},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.15451690554618835},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14523157477378845},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp634","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp634","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/275/48857427/bioinformatics_26_2_275.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19914922","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19914922","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp634","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp634","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/2/275/48857427/bioinformatics_26_2_275.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320336125","display_name":"National Science Fund for Distinguished Young Scholars","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2157716612.pdf","grobid_xml":"https://content.openalex.org/works/W2157716612.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1504533062","https://openalex.org/W1993847893","https://openalex.org/W2000971506","https://openalex.org/W2002915579","https://openalex.org/W2013947447","https://openalex.org/W2089960919","https://openalex.org/W2119114096","https://openalex.org/W2139939149","https://openalex.org/W2159675211","https://openalex.org/W2963217003"],"related_works":["https://openalex.org/W1531601525","https://openalex.org/W2099982459","https://openalex.org/W1982038138","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W4390876228","https://openalex.org/W3192210502","https://openalex.org/W1569394480","https://openalex.org/W1998222399"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
