{"id":"https://openalex.org/W2142215914","doi":"https://doi.org/10.1093/bioinformatics/btp537","title":"<i>De novo</i>computational prediction of non-coding RNA genes in prokaryotic genomes","display_name":"<i>De novo</i>computational prediction of non-coding RNA genes in prokaryotic genomes","publication_year":2009,"publication_date":"2009-09-10","ids":{"openalex":"https://openalex.org/W2142215914","doi":"https://doi.org/10.1093/bioinformatics/btp537","mag":"2142215914","pmid":"https://pubmed.ncbi.nlm.nih.gov/19744996"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp537","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp537","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2773258","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112475585","display_name":"Thao Tran","orcid":null},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Thao T. Tran","raw_affiliation_strings":["1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China","institution_ids":["https://openalex.org/I130701444","https://openalex.org/I194450716","https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058786170","display_name":"Fengfeng Zhou","orcid":"https://orcid.org/0000-0002-8108-6007"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Fengfeng Zhou","raw_affiliation_strings":["1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China","institution_ids":["https://openalex.org/I130701444","https://openalex.org/I194450716","https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017552761","display_name":"Sarah Marshburn","orcid":null},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Sarah Marshburn","raw_affiliation_strings":["1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China","institution_ids":["https://openalex.org/I130701444","https://openalex.org/I194450716","https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036927829","display_name":"Mark B. Stead","orcid":null},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Mark Stead","raw_affiliation_strings":["1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China","institution_ids":["https://openalex.org/I130701444","https://openalex.org/I194450716","https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010896477","display_name":"Sidney R. Kushner","orcid":"https://orcid.org/0000-0001-6961-6530"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Sidney R. Kushner","raw_affiliation_strings":["1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China","institution_ids":["https://openalex.org/I130701444","https://openalex.org/I194450716","https://openalex.org/I165733156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020171946","display_name":"Ying Xu","orcid":"https://orcid.org/0000-0002-7856-3343"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Ying Xu","raw_affiliation_strings":["1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"1 School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, 2Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics and BioEnergy Science Center (BESC), 3Department of Genetics, University of Georgia, Athens, GA, USA and 4College of Computer Science and Technology, Jilin University, Changchun, China","institution_ids":["https://openalex.org/I130701444","https://openalex.org/I194450716","https://openalex.org/I165733156"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5112475585"],"corresponding_institution_ids":["https://openalex.org/I130701444","https://openalex.org/I165733156","https://openalex.org/I194450716"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.6959,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.90414121,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"22","first_page":"2897","last_page":"2905"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.7451796531677246},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6375671029090881},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6259864568710327},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6084177494049072},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5885644555091858},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.5174310803413391},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4797876477241516},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4283480644226074},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.420074462890625}],"concepts":[{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.7451796531677246},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6375671029090881},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6259864568710327},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6084177494049072},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5885644555091858},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.5174310803413391},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4797876477241516},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4283480644226074},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.420074462890625}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp537","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp537","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19744996","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19744996","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2773258","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2773258","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2773258","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2773258","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6899999976158142,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2841070325","display_name":null,"funder_award_id":"GM08168","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2954911513","display_name":null,"funder_award_id":"ITR-IIS-0407204","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3361450259","display_name":null,"funder_award_id":"1R01GM081682","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3453259917","display_name":null,"funder_award_id":"DBI-0354771","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4786737960","display_name":null,"funder_award_id":"CCF-0621700","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4883808398","display_name":null,"funder_award_id":"DBI-0542119","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5145493297","display_name":null,"funder_award_id":"GM057220","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5864136272","display_name":"ITR Collaborative Research:  Combinatorial Algorithms for Biological Data Clustering","funder_award_id":"0407204","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6425796205","display_name":null,"funder_award_id":"1R01GM075331","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7137655021","display_name":"Computational Prediction of Biological Networks in Microbes and Applications to Cyanobacteria","funder_award_id":"0542119","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7168705754","display_name":"A Computational Capability for Fast and Reliable Characterization of Protein Complexes","funder_award_id":"0354771","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7355656958","display_name":"CompBio: A New Paradigm of Protein Threading: simultaneous backbone threading and side-chain packing prediction.","funder_award_id":"0621700","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7507793780","display_name":null,"funder_award_id":"GM081682","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306352","display_name":"Georgia Cancer Coalition","ror":"https://ror.org/0009gvn90"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W996611392","https://openalex.org/W1821905048","https://openalex.org/W1822105579","https://openalex.org/W1901451661","https://openalex.org/W1902809146","https://openalex.org/W1965247733","https://openalex.org/W1977469219","https://openalex.org/W1981653314","https://openalex.org/W1994958179","https://openalex.org/W1995403172","https://openalex.org/W2002013652","https://openalex.org/W2012144192","https://openalex.org/W2012739246","https://openalex.org/W2015645656","https://openalex.org/W2017965868","https://openalex.org/W2020021066","https://openalex.org/W2020442384","https://openalex.org/W2020812606","https://openalex.org/W2030230281","https://openalex.org/W2033907622","https://openalex.org/W2038079502","https://openalex.org/W2046413881","https://openalex.org/W2048566660","https://openalex.org/W2050256969","https://openalex.org/W2051115739","https://openalex.org/W2072770305","https://openalex.org/W2082124641","https://openalex.org/W2084875499","https://openalex.org/W2088938573","https://openalex.org/W2096564217","https://openalex.org/W2105133080","https://openalex.org/W2107533638","https://openalex.org/W2108740562","https://openalex.org/W2109295007","https://openalex.org/W2122032781","https://openalex.org/W2123047239","https://openalex.org/W2124166542","https://openalex.org/W2127861583","https://openalex.org/W2132006898","https://openalex.org/W2137158472","https://openalex.org/W2137677639","https://openalex.org/W2139271133","https://openalex.org/W2140302584","https://openalex.org/W2146831994","https://openalex.org/W2148925122","https://openalex.org/W2152267201","https://openalex.org/W2153140501","https://openalex.org/W2154241726","https://openalex.org/W2154369257","https://openalex.org/W2158826174","https://openalex.org/W2159477690","https://openalex.org/W2162966556","https://openalex.org/W2167475892","https://openalex.org/W6639476608","https://openalex.org/W6668803169"],"related_works":["https://openalex.org/W2058984380","https://openalex.org/W1988125422","https://openalex.org/W2900182103","https://openalex.org/W4365136234","https://openalex.org/W3183769948","https://openalex.org/W3094269189","https://openalex.org/W2112814626","https://openalex.org/W4321242349","https://openalex.org/W1590455801","https://openalex.org/W2183316074"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"and":[3],"results":[4],"are":[5],"available":[6],"at":[7],"http://csbl.bmb.uga.edu/publications/materials/tran/.":[8]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}