{"id":"https://openalex.org/W2167158432","doi":"https://doi.org/10.1093/bioinformatics/btp372","title":"GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events","display_name":"GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events","publication_year":2009,"publication_date":"2009-06-19","ids":{"openalex":"https://openalex.org/W2167158432","doi":"https://doi.org/10.1093/bioinformatics/btp372","mag":"2167158432","pmid":"https://pubmed.ncbi.nlm.nih.gov/19542149"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp372","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2188/48995315/bioinformatics_25_17_2188.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2188/48995315/bioinformatics_25_17_2188.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036092399","display_name":"Te-Chin Chu","orcid":null},"institutions":[{"id":"https://openalex.org/I134161618","display_name":"National Taiwan Normal University","ror":"https://ror.org/059dkdx38","country_code":"TW","type":"education","lineage":["https://openalex.org/I134161618"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210086894","display_name":"Research Center for Information Technology Innovation, Academia Sinica","ror":"https://ror.org/000zgvm20","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210086894","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Te-Chin Chu","raw_affiliation_strings":["1 Institute of Information Science, Academia Sinica, 2 Department of Computer Science and Information Engineering, National Taiwan Normal University, 3 Biodiversity Research Center, 4 Research Center for Information Technology Innovation, Academia Sinica and 5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Institute of Information Science, Academia Sinica, 2 Department of Computer Science and Information Engineering, National Taiwan Normal University, 3 Biodiversity Research Center, 4 Research Center for Information Technology Innovation, Academia Sinica and 5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864","https://openalex.org/I134161618","https://openalex.org/I4210086894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027325453","display_name":"Tsunglin Liu","orcid":"https://orcid.org/0000-0002-1026-1605"},"institutions":[{"id":"https://openalex.org/I4210086894","display_name":"Research Center for Information Technology Innovation, Academia Sinica","ror":"https://ror.org/000zgvm20","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210086894","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I134161618","display_name":"National Taiwan Normal University","ror":"https://ror.org/059dkdx38","country_code":"TW","type":"education","lineage":["https://openalex.org/I134161618"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Tsunglin Liu","raw_affiliation_strings":["1 Institute of Information Science, Academia Sinica, 2 Department of Computer Science and Information Engineering, National Taiwan Normal University, 3 Biodiversity Research Center, 4 Research Center for Information Technology Innovation, Academia Sinica and 5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Institute of Information Science, Academia Sinica, 2 Department of Computer Science and Information Engineering, National Taiwan Normal University, 3 Biodiversity Research Center, 4 Research Center for Information Technology Innovation, Academia Sinica and 5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864","https://openalex.org/I134161618","https://openalex.org/I4210086894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087307986","display_name":"D. T. Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I134161618","display_name":"National Taiwan Normal University","ror":"https://ror.org/059dkdx38","country_code":"TW","type":"education","lineage":["https://openalex.org/I134161618"]},{"id":"https://openalex.org/I4210086894","display_name":"Research Center for Information Technology Innovation, Academia Sinica","ror":"https://ror.org/000zgvm20","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210086894","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"D. T. Lee","raw_affiliation_strings":["1 Institute of Information Science, Academia Sinica, 2 Department of Computer Science and Information Engineering, National Taiwan Normal University, 3 Biodiversity Research Center, 4 Research Center for Information Technology Innovation, Academia Sinica and 5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Institute of Information Science, Academia Sinica, 2 Department of Computer Science and Information Engineering, National Taiwan Normal University, 3 Biodiversity Research Center, 4 Research Center for Information Technology Innovation, Academia Sinica and 5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864","https://openalex.org/I134161618","https://openalex.org/I4210086894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111695954","display_name":"Greg C. Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210086894","display_name":"Research Center for Information Technology Innovation, Academia Sinica","ror":"https://ror.org/000zgvm20","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210086894","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I134161618","display_name":"National Taiwan Normal University","ror":"https://ror.org/059dkdx38","country_code":"TW","type":"education","lineage":["https://openalex.org/I134161618"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Greg C. Lee","raw_affiliation_strings":["1 Institute of Information Science, Academia Sinica, 2 Department of Computer Science and Information Engineering, National Taiwan Normal University, 3 Biodiversity Research Center, 4 Research Center for Information Technology Innovation, Academia Sinica and 5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Institute of Information Science, Academia Sinica, 2 Department of Computer Science and Information Engineering, National Taiwan Normal University, 3 Biodiversity Research Center, 4 Research Center for Information Technology Innovation, Academia Sinica and 5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864","https://openalex.org/I134161618","https://openalex.org/I4210086894"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007966960","display_name":"Arthur Chun-Chieh Shih","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I134161618","display_name":"National Taiwan Normal University","ror":"https://ror.org/059dkdx38","country_code":"TW","type":"education","lineage":["https://openalex.org/I134161618"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210086894","display_name":"Research Center for Information Technology Innovation, Academia Sinica","ror":"https://ror.org/000zgvm20","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210086894","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Arthur Chun-Chieh Shih","raw_affiliation_strings":["1 Institute of Information Science, Academia Sinica, 2 Department of Computer Science and Information Engineering, National Taiwan Normal University, 3 Biodiversity Research Center, 4 Research Center for Information Technology Innovation, Academia Sinica and 5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Institute of Information Science, Academia Sinica, 2 Department of Computer Science and Information Engineering, National Taiwan Normal University, 3 Biodiversity Research Center, 4 Research Center for Information Technology Innovation, Academia Sinica and 5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864","https://openalex.org/I134161618","https://openalex.org/I4210086894"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5036092399"],"corresponding_institution_ids":["https://openalex.org/I134161618","https://openalex.org/I16733864","https://openalex.org/I4210086894","https://openalex.org/I4210098366"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.15949031,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"25","issue":"17","first_page":"2188","last_page":"2193"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breakpoint","display_name":"Breakpoint","score":0.9514838457107544},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5781197547912598},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5754831433296204},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.545803964138031},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.520124077796936},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5075622797012329},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4727039337158203},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.46291688084602356},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.45433929562568665},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.4532349109649658},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4435950219631195},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.38097572326660156},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35590803623199463},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19803130626678467},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.15465468168258667},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12475618720054626},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.1102653443813324},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.09048125147819519},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08321678638458252}],"concepts":[{"id":"https://openalex.org/C206936463","wikidata":"https://www.wikidata.org/wiki/Q634179","display_name":"Breakpoint","level":4,"score":0.9514838457107544},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5781197547912598},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5754831433296204},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.545803964138031},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.520124077796936},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5075622797012329},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4727039337158203},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.46291688084602356},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.45433929562568665},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.4532349109649658},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4435950219631195},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.38097572326660156},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35590803623199463},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19803130626678467},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.15465468168258667},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12475618720054626},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.1102653443813324},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.09048125147819519},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08321678638458252},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002679","descriptor_name":"Pan troglodytes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002679","descriptor_name":"Pan troglodytes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002679","descriptor_name":"Pan troglodytes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015321","descriptor_name":"Gene Rearrangement","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015321","descriptor_name":"Gene Rearrangement","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015321","descriptor_name":"Gene Rearrangement","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp372","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2188/48995315/bioinformatics_25_17_2188.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19542149","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19542149","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp372","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/17/2188/48995315/bioinformatics_25_17_2188.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167158432.pdf","grobid_xml":"https://content.openalex.org/works/W2167158432.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1689369637","https://openalex.org/W1900380445","https://openalex.org/W1968830099","https://openalex.org/W1969016839","https://openalex.org/W1986005661","https://openalex.org/W1991330646","https://openalex.org/W1992733095","https://openalex.org/W2004391041","https://openalex.org/W2010872048","https://openalex.org/W2015128080","https://openalex.org/W2017262287","https://openalex.org/W2055043387","https://openalex.org/W2057998009","https://openalex.org/W2072603644","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2100406995","https://openalex.org/W2110291136","https://openalex.org/W2114053000","https://openalex.org/W2116688916","https://openalex.org/W2129370581","https://openalex.org/W2129674115","https://openalex.org/W2144866873","https://openalex.org/W2146384771","https://openalex.org/W2152331922","https://openalex.org/W2155237411","https://openalex.org/W2158714788","https://openalex.org/W2167719653","https://openalex.org/W2169602699","https://openalex.org/W2412439129","https://openalex.org/W6715209744"],"related_works":["https://openalex.org/W2129361631","https://openalex.org/W2948014085","https://openalex.org/W2004215917","https://openalex.org/W2103737249","https://openalex.org/W2051969447","https://openalex.org/W2079145549","https://openalex.org/W1486249959","https://openalex.org/W1974956921","https://openalex.org/W4389053053","https://openalex.org/W2903170547"],"abstract_inverted_index":{"We":[0],"propose":[1],"an":[2,43],"effective":[3],"and":[4,26,64],"efficient":[5],"pairwise":[6],"sequence":[7],"alignment":[8],"algorithm,":[9],"called":[10],"GR-Aligner":[11,40],"(Genomic":[12],"Rearrangement":[13],"Aligner),":[14],"which":[15],"can":[16],"find":[17],"breakpoints":[18],"of":[19,29,49,67],"rearrangement":[20],"events":[21],"by":[22,34],"integrating":[23],"the":[24,30,47,53,68],"forward":[25],"reverse":[27],"alignments":[28,48],"breakpoint":[31],"regions":[32],"flanked":[33],"homologously":[35],"rearranged":[36],"sequences.":[37],"In":[38],"addition,":[39],"also":[41],"provides":[42],"option":[44],"to":[45,52],"view":[46],"sequences":[50],"extended":[51],"breakpoints.":[54],"These":[55],"outputs":[56],"provide":[57],"materials":[58],"for":[59],"studying":[60],"possible":[61],"evolutionary":[62],"mechanisms":[63],"biological":[65],"functionalities":[66],"rearrangement.":[69]},"counts_by_year":[{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
