{"id":"https://openalex.org/W2140280811","doi":"https://doi.org/10.1093/bioinformatics/btp311","title":"Complex discovery from weighted PPI networks","display_name":"Complex discovery from weighted PPI networks","publication_year":2009,"publication_date":"2009-05-12","ids":{"openalex":"https://openalex.org/W2140280811","doi":"https://doi.org/10.1093/bioinformatics/btp311","mag":"2140280811","pmid":"https://pubmed.ncbi.nlm.nih.gov/19435747"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp311","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp311","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/15/1891/16888525/btp311.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/15/1891/16888525/btp311.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081085461","display_name":"Guimei Liu","orcid":"https://orcid.org/0000-0001-8992-6771"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Guimei Liu","raw_affiliation_strings":["1 School of Computing, National University of Singapore, Singapore and 2 Institute for Infocomm Research, Singapore","School of Computing, National University of Singapore, Singapore and Institute for Infocomm Research, Singapore#TAB#"],"affiliations":[{"raw_affiliation_string":"1 School of Computing, National University of Singapore, Singapore and 2 Institute for Infocomm Research, Singapore","institution_ids":["https://openalex.org/I3005327000","https://openalex.org/I165932596"]},{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore and Institute for Infocomm Research, Singapore#TAB#","institution_ids":["https://openalex.org/I3005327000","https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012381970","display_name":"Limsoon Wong","orcid":"https://orcid.org/0000-0003-1241-5441"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Limsoon Wong","raw_affiliation_strings":["1 School of Computing, National University of Singapore, Singapore and 2 Institute for Infocomm Research, Singapore"],"affiliations":[{"raw_affiliation_string":"1 School of Computing, National University of Singapore, Singapore and 2 Institute for Infocomm Research, Singapore","institution_ids":["https://openalex.org/I3005327000","https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056590153","display_name":"Hon Nian Chua","orcid":null},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Hon Nian Chua","raw_affiliation_strings":["1 School of Computing, National University of Singapore, Singapore and 2 Institute for Infocomm Research, Singapore"],"affiliations":[{"raw_affiliation_string":"1 School of Computing, National University of Singapore, Singapore and 2 Institute for Infocomm Research, Singapore","institution_ids":["https://openalex.org/I3005327000","https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081085461"],"corresponding_institution_ids":["https://openalex.org/I165932596","https://openalex.org/I3005327000"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":8.2226,"has_fulltext":true,"cited_by_count":474,"citation_normalized_percentile":{"value":0.98347303,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"25","issue":"15","first_page":"1891","last_page":"1897"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7271490097045898},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5725806355476379},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.5654871463775635},{"id":"https://openalex.org/keywords/iterative-method","display_name":"Iterative method","score":0.5297879576683044},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.5214873552322388},{"id":"https://openalex.org/keywords/interconnectivity","display_name":"Interconnectivity","score":0.5130895376205444},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4761350452899933},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.47156092524528503},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.45485591888427734},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4187568128108978},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.38959598541259766},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3307848572731018},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1094444990158081},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09907323122024536}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7271490097045898},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5725806355476379},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.5654871463775635},{"id":"https://openalex.org/C159694833","wikidata":"https://www.wikidata.org/wiki/Q2321565","display_name":"Iterative method","level":2,"score":0.5297879576683044},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.5214873552322388},{"id":"https://openalex.org/C25516864","wikidata":"https://www.wikidata.org/wiki/Q1665949","display_name":"Interconnectivity","level":2,"score":0.5130895376205444},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4761350452899933},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.47156092524528503},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.45485591888427734},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4187568128108978},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.38959598541259766},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3307848572731018},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1094444990158081},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09907323122024536},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp311","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp311","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/15/1891/16888525/btp311.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19435747","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19435747","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/39724","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/39724","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp311","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp311","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/15/1891/16888525/btp311.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3034753964","display_name":null,"funder_award_id":"grant","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320709","display_name":"National Research Foundation Singapore","ror":"https://ror.org/03cpyc314"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140280811.pdf","grobid_xml":"https://content.openalex.org/works/W2140280811.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1485582261","https://openalex.org/W1576210418","https://openalex.org/W1783384641","https://openalex.org/W1883660207","https://openalex.org/W1918391659","https://openalex.org/W1956694423","https://openalex.org/W1993229737","https://openalex.org/W2027439534","https://openalex.org/W2037036397","https://openalex.org/W2050721857","https://openalex.org/W2053906518","https://openalex.org/W2065304353","https://openalex.org/W2084619201","https://openalex.org/W2090422756","https://openalex.org/W2100371004","https://openalex.org/W2103017472","https://openalex.org/W2107710781","https://openalex.org/W2113654464","https://openalex.org/W2116117181","https://openalex.org/W2118446779","https://openalex.org/W2119359534","https://openalex.org/W2121564430","https://openalex.org/W2124354935","https://openalex.org/W2133894503","https://openalex.org/W2136850043","https://openalex.org/W2144344817","https://openalex.org/W2156537287","https://openalex.org/W2160429376","https://openalex.org/W2160875291","https://openalex.org/W2164928285","https://openalex.org/W2165533101","https://openalex.org/W2167869241","https://openalex.org/W2172049947","https://openalex.org/W2178465836","https://openalex.org/W4247272746","https://openalex.org/W6639546282","https://openalex.org/W6657524342","https://openalex.org/W6663927594","https://openalex.org/W6681786464","https://openalex.org/W6682911404"],"related_works":["https://openalex.org/W174982720","https://openalex.org/W2151173140","https://openalex.org/W4386857536","https://openalex.org/W2511973026","https://openalex.org/W1981008129","https://openalex.org/W1800442676","https://openalex.org/W2804418842","https://openalex.org/W2038194959","https://openalex.org/W2778290364","https://openalex.org/W26088023"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":26},{"year":2021,"cited_by_count":36},{"year":2020,"cited_by_count":30},{"year":2019,"cited_by_count":29},{"year":2018,"cited_by_count":40},{"year":2017,"cited_by_count":53},{"year":2016,"cited_by_count":45},{"year":2015,"cited_by_count":30},{"year":2014,"cited_by_count":35},{"year":2013,"cited_by_count":41},{"year":2012,"cited_by_count":31}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
