{"id":"https://openalex.org/W2113445340","doi":"https://doi.org/10.1093/bioinformatics/btp299","title":"DIANA-mirPath: Integrating human and mouse microRNAs in pathways","display_name":"DIANA-mirPath: Integrating human and mouse microRNAs in pathways","publication_year":2009,"publication_date":"2009-05-12","ids":{"openalex":"https://openalex.org/W2113445340","doi":"https://doi.org/10.1093/bioinformatics/btp299","mag":"2113445340","pmid":"https://pubmed.ncbi.nlm.nih.gov/19435746"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp299","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/15/1991/48992845/bioinformatics_25_15_1991.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/15/1991/48992845/bioinformatics_25_15_1991.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087358026","display_name":"Giorgio L. Papadopoulos","orcid":"https://orcid.org/0000-0003-0199-0256"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I4210150208","display_name":"Molecular Oncology (United States)","ror":"https://ror.org/04rtkc841","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150208"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"G. L. Papadopoulos","raw_affiliation_strings":["1 Institute of Molecular Oncology, Biomedical Sciences Research Center \u201cAlexander Fleming\u201d, 16602 Varkiza, Greece, 2 Computer and Information Sciences, University of Pennsylvania, Philadelphia, PA, USA and 3 Synaptic Ltd., Heraklion, Greece"],"affiliations":[{"raw_affiliation_string":"1 Institute of Molecular Oncology, Biomedical Sciences Research Center \u201cAlexander Fleming\u201d, 16602 Varkiza, Greece, 2 Computer and Information Sciences, University of Pennsylvania, Philadelphia, PA, USA and 3 Synaptic Ltd., Heraklion, Greece","institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027227036","display_name":"Panagiotis Alexiou","orcid":"https://orcid.org/0000-0003-3437-7482"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I4210150208","display_name":"Molecular Oncology (United States)","ror":"https://ror.org/04rtkc841","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150208"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. Alexiou","raw_affiliation_strings":["1 Institute of Molecular Oncology, Biomedical Sciences Research Center \u201cAlexander Fleming\u201d, 16602 Varkiza, Greece, 2 Computer and Information Sciences, University of Pennsylvania, Philadelphia, PA, USA and 3 Synaptic Ltd., Heraklion, Greece"],"affiliations":[{"raw_affiliation_string":"1 Institute of Molecular Oncology, Biomedical Sciences Research Center \u201cAlexander Fleming\u201d, 16602 Varkiza, Greece, 2 Computer and Information Sciences, University of Pennsylvania, Philadelphia, PA, USA and 3 Synaptic Ltd., Heraklion, Greece","institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011455160","display_name":"Manolis Maragkakis","orcid":"https://orcid.org/0000-0002-3158-1763"},"institutions":[{"id":"https://openalex.org/I4210150208","display_name":"Molecular Oncology (United States)","ror":"https://ror.org/04rtkc841","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150208"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Maragkakis","raw_affiliation_strings":["1 Institute of Molecular Oncology, Biomedical Sciences Research Center \u201cAlexander Fleming\u201d, 16602 Varkiza, Greece, 2 Computer and Information Sciences, University of Pennsylvania, Philadelphia, PA, USA and 3 Synaptic Ltd., Heraklion, Greece"],"affiliations":[{"raw_affiliation_string":"1 Institute of Molecular Oncology, Biomedical Sciences Research Center \u201cAlexander Fleming\u201d, 16602 Varkiza, Greece, 2 Computer and Information Sciences, University of Pennsylvania, Philadelphia, PA, USA and 3 Synaptic Ltd., Heraklion, Greece","institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004335778","display_name":"Martin Reczko","orcid":"https://orcid.org/0000-0002-0005-8718"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I4210150208","display_name":"Molecular Oncology (United States)","ror":"https://ror.org/04rtkc841","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150208"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Reczko","raw_affiliation_strings":["1 Institute of Molecular Oncology, Biomedical Sciences Research Center \u201cAlexander Fleming\u201d, 16602 Varkiza, Greece, 2 Computer and Information Sciences, University of Pennsylvania, Philadelphia, PA, USA and 3 Synaptic Ltd., Heraklion, Greece"],"affiliations":[{"raw_affiliation_string":"1 Institute of Molecular Oncology, Biomedical Sciences Research Center \u201cAlexander Fleming\u201d, 16602 Varkiza, Greece, 2 Computer and Information Sciences, University of Pennsylvania, Philadelphia, PA, USA and 3 Synaptic Ltd., Heraklion, Greece","institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084654971","display_name":"Artemis G. Hatzigeorgiou","orcid":"https://orcid.org/0000-0003-1414-5668"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I4210150208","display_name":"Molecular Oncology (United States)","ror":"https://ror.org/04rtkc841","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150208"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. G. Hatzigeorgiou","raw_affiliation_strings":["1 Institute of Molecular Oncology, Biomedical Sciences Research Center \u201cAlexander Fleming\u201d, 16602 Varkiza, Greece, 2 Computer and Information Sciences, University of Pennsylvania, Philadelphia, PA, USA and 3 Synaptic Ltd., Heraklion, Greece"],"affiliations":[{"raw_affiliation_string":"1 Institute of Molecular Oncology, Biomedical Sciences Research Center \u201cAlexander Fleming\u201d, 16602 Varkiza, Greece, 2 Computer and Information Sciences, University of Pennsylvania, Philadelphia, PA, USA and 3 Synaptic Ltd., Heraklion, Greece","institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5087358026"],"corresponding_institution_ids":["https://openalex.org/I4210150208","https://openalex.org/I79576946"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":10.8434,"has_fulltext":false,"cited_by_count":275,"citation_normalized_percentile":{"value":0.98669884,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"25","issue":"15","first_page":"1991","last_page":"1993"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7864710092544556},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.6564916372299194},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5977979898452759},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5061025023460388},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5037383437156677},{"id":"https://openalex.org/keywords/login","display_name":"Login","score":0.4868447184562683},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3365137577056885},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32973140478134155},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3014926314353943},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.27971458435058594},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1922120451927185},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.14694911241531372},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10667359828948975}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7864710092544556},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.6564916372299194},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5977979898452759},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5061025023460388},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5037383437156677},{"id":"https://openalex.org/C113324615","wikidata":"https://www.wikidata.org/wiki/Q472302","display_name":"Login","level":2,"score":0.4868447184562683},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3365137577056885},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32973140478134155},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3014926314353943},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.27971458435058594},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1922120451927185},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.14694911241531372},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10667359828948975}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp299","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/15/1991/48992845/bioinformatics_25_15_1991.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19435746","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19435746","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp299","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/15/1991/48992845/bioinformatics_25_15_1991.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113445340.pdf","grobid_xml":"https://content.openalex.org/works/W2113445340.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1648301895","https://openalex.org/W1963811831","https://openalex.org/W1975437957","https://openalex.org/W1976180663","https://openalex.org/W2001782792","https://openalex.org/W2006079840","https://openalex.org/W2040191060","https://openalex.org/W2047291819","https://openalex.org/W2050869737","https://openalex.org/W2065566217","https://openalex.org/W2066320835","https://openalex.org/W2083381199","https://openalex.org/W2087336809","https://openalex.org/W2094722357","https://openalex.org/W2116397531","https://openalex.org/W2128219894","https://openalex.org/W2136943892","https://openalex.org/W2159482845","https://openalex.org/W2160998038","https://openalex.org/W2166240615","https://openalex.org/W3103971085","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4256170434","https://openalex.org/W4387948744","https://openalex.org/W1987520879","https://openalex.org/W4233948907","https://openalex.org/W184793361","https://openalex.org/W4235220108","https://openalex.org/W2352732738","https://openalex.org/W2057742104","https://openalex.org/W4283692078"],"abstract_inverted_index":{"The":[0],"software":[1],"is":[2,7],"available":[3],"at":[4],"http://microrna.gr/mirpath":[5],"and":[6],"free":[8],"for":[9],"all":[10],"users":[11],"with":[12],"no":[13],"login":[14],"or":[15],"download":[16],"requirement.":[17]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":32},{"year":2014,"cited_by_count":38},{"year":2013,"cited_by_count":34},{"year":2012,"cited_by_count":50}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
