{"id":"https://openalex.org/W2125832315","doi":"https://doi.org/10.1093/bioinformatics/btp281","title":"List-decoding methods for inferring polynomials in finite dynamical gene network models","display_name":"List-decoding methods for inferring polynomials in finite dynamical gene network models","publication_year":2009,"publication_date":"2009-04-28","ids":{"openalex":"https://openalex.org/W2125832315","doi":"https://doi.org/10.1093/bioinformatics/btp281","mag":"2125832315","pmid":"https://pubmed.ncbi.nlm.nih.gov/19401400"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp281","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp281","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://mediatum.ub.tum.de/node?id=823776","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001321868","display_name":"Janis Dingel","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Janis Dingel","raw_affiliation_strings":["1 Institute for Communications Engineering, Technische Universit\u00e4t M\u00fcnchen, Munich, Germany and 2Coordinated Science Lab, University of Illinois at Urbana Champaign, Urbana, IL, USA"],"affiliations":[{"raw_affiliation_string":"1 Institute for Communications Engineering, Technische Universit\u00e4t M\u00fcnchen, Munich, Germany and 2Coordinated Science Lab, University of Illinois at Urbana Champaign, Urbana, IL, USA","institution_ids":["https://openalex.org/I157725225","https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084947882","display_name":"Olgica Milenkovi\u0107","orcid":"https://orcid.org/0000-0002-1871-4912"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Olgica Milenkovic","raw_affiliation_strings":["1 Institute for Communications Engineering, Technische Universit\u00e4t M\u00fcnchen, Munich, Germany and 2Coordinated Science Lab, University of Illinois at Urbana Champaign, Urbana, IL, USA"],"affiliations":[{"raw_affiliation_string":"1 Institute for Communications Engineering, Technische Universit\u00e4t M\u00fcnchen, Munich, Germany and 2Coordinated Science Lab, University of Illinois at Urbana Champaign, Urbana, IL, USA","institution_ids":["https://openalex.org/I157725225","https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001321868"],"corresponding_institution_ids":["https://openalex.org/I157725225","https://openalex.org/I62916508"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.15487205,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"25","issue":"13","first_page":"1686","last_page":"1693"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7046335339546204},{"id":"https://openalex.org/keywords/algebraic-expression","display_name":"Algebraic expression","score":0.6784288883209229},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.6370497345924377},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5942220091819763},{"id":"https://openalex.org/keywords/reverse-engineering","display_name":"Reverse engineering","score":0.5739018321037292},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4837472438812256},{"id":"https://openalex.org/keywords/network-dynamics","display_name":"Network dynamics","score":0.42264169454574585},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4203239977359772},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.41895991563796997},{"id":"https://openalex.org/keywords/coding-theory","display_name":"Coding theory","score":0.41878557205200195},{"id":"https://openalex.org/keywords/dynamical-systems-theory","display_name":"Dynamical systems theory","score":0.4126276969909668},{"id":"https://openalex.org/keywords/algebraic-number","display_name":"Algebraic number","score":0.30614137649536133},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18550297617912292},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15646061301231384},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.149465411901474},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12274381518363953},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.10745072364807129}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7046335339546204},{"id":"https://openalex.org/C18912844","wikidata":"https://www.wikidata.org/wiki/Q4724001","display_name":"Algebraic expression","level":3,"score":0.6784288883209229},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.6370497345924377},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5942220091819763},{"id":"https://openalex.org/C207850805","wikidata":"https://www.wikidata.org/wiki/Q269608","display_name":"Reverse engineering","level":2,"score":0.5739018321037292},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4837472438812256},{"id":"https://openalex.org/C123757187","wikidata":"https://www.wikidata.org/wiki/Q9195957","display_name":"Network dynamics","level":2,"score":0.42264169454574585},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4203239977359772},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.41895991563796997},{"id":"https://openalex.org/C113709454","wikidata":"https://www.wikidata.org/wiki/Q602136","display_name":"Coding theory","level":2,"score":0.41878557205200195},{"id":"https://openalex.org/C79379906","wikidata":"https://www.wikidata.org/wiki/Q3174497","display_name":"Dynamical systems theory","level":2,"score":0.4126276969909668},{"id":"https://openalex.org/C9376300","wikidata":"https://www.wikidata.org/wiki/Q168817","display_name":"Algebraic number","level":2,"score":0.30614137649536133},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18550297617912292},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15646061301231384},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.149465411901474},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12274381518363953},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.10745072364807129},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp281","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp281","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19401400","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19401400","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:mediatum.ub.tum.de:node/823776","is_oa":true,"landing_page_url":"http://mediatum.ub.tum.de/node?id=823776","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:mediatum.ub.tum.de:node/823776","is_oa":true,"landing_page_url":"http://mediatum.ub.tum.de/node?id=823776","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W103930971","https://openalex.org/W1481919380","https://openalex.org/W1499965417","https://openalex.org/W1666413479","https://openalex.org/W1969547738","https://openalex.org/W1984196434","https://openalex.org/W1986153750","https://openalex.org/W1986346957","https://openalex.org/W2000689241","https://openalex.org/W2005302168","https://openalex.org/W2007317914","https://openalex.org/W2019655981","https://openalex.org/W2026726507","https://openalex.org/W2032431003","https://openalex.org/W2033235216","https://openalex.org/W2038716712","https://openalex.org/W2058221907","https://openalex.org/W2067982090","https://openalex.org/W2076372398","https://openalex.org/W2099362734","https://openalex.org/W2099807710","https://openalex.org/W2100603120","https://openalex.org/W2106595075","https://openalex.org/W2106945333","https://openalex.org/W2109831361","https://openalex.org/W2116843759","https://openalex.org/W2117571667","https://openalex.org/W2127057035","https://openalex.org/W2129417730","https://openalex.org/W2156841851","https://openalex.org/W2158973107","https://openalex.org/W2160533336","https://openalex.org/W2167155713","https://openalex.org/W2319466955","https://openalex.org/W4234426551","https://openalex.org/W4245266864","https://openalex.org/W6628887588","https://openalex.org/W6637194797","https://openalex.org/W6646329347","https://openalex.org/W6654768034"],"related_works":["https://openalex.org/W2363831530","https://openalex.org/W2363845219","https://openalex.org/W2106927126","https://openalex.org/W2534730685","https://openalex.org/W4301253891","https://openalex.org/W2952215042","https://openalex.org/W1974467070","https://openalex.org/W2979339892","https://openalex.org/W3082321448","https://openalex.org/W2004114069"],"abstract_inverted_index":{"Software":[0],"codes":[1],"for":[2,6],"list-decoding":[3],"algorithms":[4],"suitable":[5],"direct":[7],"application":[8],"to":[9],"quantized":[10],"expression":[11],"data":[12],"will":[13],"be":[14],"publicly":[15],"available":[16],"at":[17],"the":[18],"authors'":[19],"web-pages.":[20]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
