{"id":"https://openalex.org/W2912046302","doi":"https://doi.org/10.1093/bioinformatics/btp274","title":"Cloud computing","display_name":"Cloud computing","publication_year":2009,"publication_date":"2009-05-13","ids":{"openalex":"https://openalex.org/W2912046302","doi":"https://doi.org/10.1093/bioinformatics/btp274","mag":"2912046302","pmid":"https://pubmed.ncbi.nlm.nih.gov/19435745"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp274","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp274","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/1475/48991035/bioinformatics_25_12_1475.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/1475/48991035/bioinformatics_25_12_1475.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059430118","display_name":"Alex Bateman","orcid":"https://orcid.org/0000-0002-6982-4660"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Alex Bateman","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077208420","display_name":"Matthew D. Wood","orcid":"https://orcid.org/0000-0002-1140-1526"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matt Wood","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5059430118"],"corresponding_institution_ids":["https://openalex.org/I2802476451"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":30.7893,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.99484449,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"25","issue":"12","first_page":"1475","last_page":"1475"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.18289999663829803,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.18289999663829803,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7818621397018433},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7059968709945679},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.24899759888648987}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7818621397018433},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7059968709945679},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.24899759888648987}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp274","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp274","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/1475/48991035/bioinformatics_25_12_1475.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19435745","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19435745","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp274","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp274","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/1475/48991035/bioinformatics_25_12_1475.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4244478748","https://openalex.org/W4223488648","https://openalex.org/W2134969820","https://openalex.org/W2251605416","https://openalex.org/W4389340727","https://openalex.org/W4205786897","https://openalex.org/W3150465815","https://openalex.org/W1997222214","https://openalex.org/W2802581102"],"abstract_inverted_index":{"Contact:":[0],"agb@sanger.ac.uk":[1],"We":[2,338],"are":[3,32,248,554],"used":[4,555],"to":[5,77,82,95,104,160,187,189,216,239,274,342,354,382,400,502,596,602,609,612,617,625],"having":[6,88,273],"huge":[7],"datasets":[8,385,390,585],"pouring":[9],"out":[10],"of":[11,19,54,66,121,174,219,225,289,293,326,336,360,417,517,552,583,630],"high-throughput":[12,21],"genome":[13,405],"centres,":[14,499],"but":[15,85,90],"with":[16,119,179,198,250,264,299,457,466,485,590],"the":[17,44,142,145,223,229,276,294,333,346,351,430,486,544,579,598,607,613],"advent":[18],"ultra":[20],"sequencing,":[22],"genotyping":[23],"and":[24,112,149,377,395,460,475,531,565],"other":[25],"functional":[26],"genomics":[27],"in":[28,38,107,332,386,434,510,567,578],"every":[29],"laboratory":[30],"we":[31,167,328],"facing":[33],"a":[34,286,402,412,439,452,470,476,568],"scary":[35],"new":[36],"era":[37],"petabyte":[39],"scale":[40,497],"data.":[41,56,122,614],"For":[42],"example,":[43],"1000":[45],"genomes'":[46],"projects":[47],"will":[48,166],"probably":[49],"produce":[50],"about":[51,63,191,344],"1":[52],"Tb":[53],"finished":[55],"To":[57],"process":[58],"data,":[59],"this":[60,71],"project":[61],"required":[62],"100":[64,489],"Tbs":[65],"scratch":[67],"disk.":[68],"Working":[69],"at":[70],"level,":[72],"real":[73,108,133,209,414],"technical":[74,171,180],"limitations":[75],"start":[76],"hamper":[78,205],"progress.":[79],"One":[80],"has":[81,380,537],"consider":[83],"storage,":[84],"not":[86,185,340],"just":[87,488],"enough,":[89],"making":[91],"sure":[92],"its":[93],"available":[94,431],"your":[96,619],"compute":[97,432,446,530,546,560,608,620],"(network),":[98],"that":[99],"you":[100,137,183],"have":[101,188,306,341,365],"sufficient":[102],"I/O":[103],"do":[105,136,184,339],"anything":[106],"time.":[109],"Software":[110],"language":[111],"implementation":[113],"become":[114,132],"critical":[115],"factors":[116],"when":[117,297,310],"dealing":[118,298],"terabytes":[120],"With":[123,420],"such":[124,314,373,392,520],"high-intensity":[125],"computing,":[126],"power":[127,566],"(getting":[128],"enough),":[129],"cooling,":[130],"etc.":[131],"issues.":[134],"How":[135],"let":[138],"anyone":[139],"else":[140],"access":[141,254,618],"data?":[143],"Is":[144],"data":[146,347,410,437,462,498,570,599],"backed":[147],"up":[148,353],"even":[150],"if":[151],"it":[152,158,572],"is":[153,255,262,348,533,547],"how":[154,165,345],"many":[155,292],"years":[156],"would":[157,236,329],"take":[159],"restore":[161],"from":[162,272,406],"tape?":[163],"So":[164],"solve":[168,217],"all":[169,357],"these":[170,175,194,201,220,226,369,418],"hurdles?":[172],"Each":[173],"can":[176,203,214,232,573,586],"be":[177,233,237,574,588,623],"solved":[178],"knowledge.":[181],"But":[182],"want":[186],"worry":[190,343],"working":[192,197],"within":[193],"constraints.":[195],"When":[196],"large":[199,301,496,584,627],"datasets,":[200],"constraints":[202,295],"continually":[204],"progress":[206],"on":[207,228,443],"getting":[208],"research":[210,270],"done.":[211],"Whilst":[212],"one":[213],"choose":[215],"each":[218],"individual":[221,269,423],"problems,":[222],"impact":[224],"constrains":[227,247],"scientific":[230],"workflow":[231],"considerable.":[234],"It":[235],"wiser":[238],"optimize":[240],"for":[241,291,361,495,600],"productivity.":[242],"In":[243,449],"software":[244,352],"development,":[245],"similar":[246,287,308],"addressed":[249],"abstraction":[251,290],"layers.":[252],"Database":[253],"mediated":[256],"through":[257],"relational":[258],"mapping":[259],"tools,":[260],"visualization":[261],"aided":[263],"powerful":[265],"graphical":[266],"packages":[267],"preventing":[268],"groups":[271],"reinvent":[275],"wheel.":[277],"Rails,":[278],"Eclipse,":[279],"Processing,":[280],"Hibernate,":[281],"Catalyst.":[282],"Cloud":[283,535],"computing":[284,536],"offers":[285],"level":[288],"encountered":[296,307],"extremely":[300],"(?)":[302],"datasets.":[303,628],"You":[304],"might":[305],"ideas":[309],"using":[311,427],"hosted":[312,389],"services":[313,519],"as":[315,374,393,521,527,543],"Google":[316,376],"Mail,":[317],"ManyEyes":[318],"(http://manyeyes.alphaworks.ibm.com),":[319],"others.":[320],"These":[321],"tools":[322],"provide":[323,383,503],"an":[324,450,594],"example":[325,416],"what":[327],"ideally":[330],"like":[331],"perfect":[334],"world":[335],"Bioinformatics.":[337],"stored,":[349],"keeping":[350],"date.":[355],"Its":[356],"taken":[358,367],"care":[359],"you.":[362],"First":[363],"steps":[364],"been":[366],"along":[368],"lines":[370],"by":[371,576],"companies":[372],"Amazon,":[375],"Microsoft.":[378],"Amazon":[379],"started":[381],"Bioinformatics":[384],"their":[387],"publicly":[388],"(http://aws.amazon.com/publicdatasets/)":[391],"Ensembl":[394],"Genbank.":[396],"A":[397],"recent":[398],"requirement":[399],"assemble":[401],"full":[403],"human":[404],"454":[407],"short":[408],"read":[409],"provided":[411],"good":[413],"life":[415],"approaches.":[419,592],"140":[421],"million":[422],"reads":[424],"requiring":[425],"alignment":[426],"SSAHA":[428,492],"exceeding":[429],"capacity":[433],"our":[435],"own":[436],"centre,":[438,571],"build":[440],"was":[441,464],"performed":[442],"Amazon's":[444],"elastic":[445],"service,":[447],"EC2.":[448],"afternoon,":[451],"scalable,":[453],"ad":[454],"hoc":[455],"cluster":[456],"queue":[458],"management":[459],"replicated":[461],"storage":[463,532],"constructed":[465],"nothing":[467],"more":[468],"than":[469],"few":[471],"web":[472],"service":[473,481],"calls":[474],"valid":[477],"credit":[478],"card.":[479],"No":[480,483],"contracts.":[482],"consultation":[484],"vendor,":[487],"nodes":[490],"performing":[491],"alignments.":[493],"Implications":[494],"currently":[500],"engineered":[501],"peak":[504],"capacity,":[505],"which":[506],"often":[507],"goes":[508],"unused":[509,559],"idle":[511],"periods.":[512],"The":[513,581],"elastic,":[514],"pay-as-you-go":[515],"nature":[516],"cloud":[518,591,604],"AWS":[522],"means":[523],"lower":[524],"infrastructure":[525,621],"overheads,":[526],"only":[528],"in-use":[529],"billable.":[534],"green":[538],"credentials":[539],"too,":[540],"so":[541],"long":[542],"off-site":[545],"located":[548],"where":[549],"renewable":[550],"sources":[551],"energy":[553],"preferentially.":[556],"Additionally,":[557],"whilst":[558],"may":[561,622],"still":[562],"require":[563],"cooling":[564],"local":[569],"reused":[575],"others":[577,601,616],"cloud.":[580],"transfer":[582],"also":[587],"simplified":[589],"As":[593],"alternative":[595],"shipping":[597],"analyse,":[603],"approaches":[605],"allow":[606],"remain":[610],"close":[611],"Allowing":[615],"preferable":[624],"distributing":[626],"Conflict":[629],"Interest:":[631],"none":[632],"declared.":[633]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":8}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2019-02-21T00:00:00"}
