{"id":"https://openalex.org/W2158380564","doi":"https://doi.org/10.1093/bioinformatics/btp005","title":"Prequips\u2014an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data","display_name":"Prequips\u2014an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data","publication_year":2009,"publication_date":"2009-01-06","ids":{"openalex":"https://openalex.org/W2158380564","doi":"https://doi.org/10.1093/bioinformatics/btp005","mag":"2158380564","pmid":"https://pubmed.ncbi.nlm.nih.gov/19129212"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/682/48983762/bioinformatics_25_5_682.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/682/48983762/bioinformatics_25_5_682.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066335313","display_name":"Nils Gehlenborg","orcid":"https://orcid.org/0000-0003-0327-8297"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE","GB","KR","US"],"is_corresponding":false,"raw_author_name":"Nils Gehlenborg","raw_affiliation_strings":["1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I123900574","https://openalex.org/I8087733","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100733278","display_name":"Wei Yan","orcid":"https://orcid.org/0000-0003-0619-5876"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["DE","GB","KR","US"],"is_corresponding":false,"raw_author_name":"Wei Yan","raw_affiliation_strings":["1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I123900574","https://openalex.org/I8087733","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049041791","display_name":"Inyoul Y. Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["DE","GB","KR","US"],"is_corresponding":false,"raw_author_name":"Inyoul Y. Lee","raw_affiliation_strings":["1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I123900574","https://openalex.org/I8087733","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110061781","display_name":"Hyuntae Yoo","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE","GB","KR","US"],"is_corresponding":false,"raw_author_name":"Hyuntae Yoo","raw_affiliation_strings":["1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I123900574","https://openalex.org/I8087733","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061586847","display_name":"Kay Nieselt","orcid":"https://orcid.org/0000-0002-1283-7065"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["DE","GB","KR","US"],"is_corresponding":false,"raw_author_name":"Kay Nieselt","raw_affiliation_strings":["1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I123900574","https://openalex.org/I8087733","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027374744","display_name":"Daehee Hwang","orcid":"https://orcid.org/0000-0002-7553-0044"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["DE","GB","KR","US"],"is_corresponding":true,"raw_author_name":"Daehee Hwang","raw_affiliation_strings":["1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I123900574","https://openalex.org/I8087733","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053361384","display_name":"Ruedi Aebersold","orcid":"https://orcid.org/0000-0002-9576-3267"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["DE","GB","KR","US"],"is_corresponding":false,"raw_author_name":"Ruedi Aebersold","raw_affiliation_strings":["1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I123900574","https://openalex.org/I8087733","https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085306431","display_name":"Leroy Hood","orcid":"https://orcid.org/0000-0001-7158-3678"},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE","GB","KR","US"],"is_corresponding":false,"raw_author_name":"Leroy Hood","raw_affiliation_strings":["1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Institute for Systems Biology, Seattle, USA, 2Center for Bioinformatics T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK, 4I-Bio Program, 5Department of Chemical Engineering, POSTECH, Pohang, Republic of Korea and 6Institute for Molecular Systems Biology, ETH and Faculty of Natural Science, University of Z\u00fcrich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I123900574","https://openalex.org/I8087733","https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5027374744"],"corresponding_institution_ids":["https://openalex.org/I123900574","https://openalex.org/I1303153112","https://openalex.org/I3148997608","https://openalex.org/I8087733"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.8327,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.84195281,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"25","issue":"5","first_page":"682","last_page":"683"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.8240126371383667},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7069313526153564},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6216490268707275},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5795168280601501},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.47828301787376404},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4276163578033447},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3088653087615967},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.16998812556266785},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16931092739105225},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12652063369750977}],"concepts":[{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.8240126371383667},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7069313526153564},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6216490268707275},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5795168280601501},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.47828301787376404},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4276163578033447},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3088653087615967},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.16998812556266785},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16931092739105225},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12652063369750977},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btp005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/682/48983762/bioinformatics_25_5_682.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19129212","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19129212","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:155198","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gehlenborg, N; Yan, W; Lee, I Y; Yoo, H; Nieselt, K; Hwang, D; Aebersold, R; Hood, L  (2009). Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.  Bioinformatics, 25(5):682-683.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/223970","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/223970","pdf_url":"http://hdl.handle.net/20.500.11850/223970","source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 25 (5)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:oasis.postech.ac.kr:2014.oak/29004","is_oa":false,"landing_page_url":"https://oasis.postech.ac.kr/handle/2014.oak/29004","pdf_url":null,"source":{"id":"https://openalex.org/S4306401965","display_name":"Open Access System for Information Sharing (Pohang University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123900574","host_organization_name":"Pohang University of Science and Technology","host_organization_lineage":["https://openalex.org/I123900574"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2720692","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2720692","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"doi:10.3929/ethz-b-000223970","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000223970","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.5167/uzh-155198","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-155198","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/682/48983762/bioinformatics_25_5_682.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G156346481","display_name":null,"funder_award_id":"NS41997","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3530239307","display_name":null,"funder_award_id":"NHLBI","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G357155390","display_name":null,"funder_award_id":"N01-HV-28179","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G4467967548","display_name":null,"funder_award_id":"N01-HV-28179","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7445402995","display_name":null,"funder_award_id":"NHLBI,","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8748628257","display_name":null,"funder_award_id":"NS41997","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"}],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158380564.pdf","grobid_xml":"https://content.openalex.org/works/W2158380564.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W45534775","https://openalex.org/W1812401750","https://openalex.org/W1966621931","https://openalex.org/W1991165514","https://openalex.org/W2112078820","https://openalex.org/W2116134054","https://openalex.org/W2132899146"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2121496884","https://openalex.org/W2387910809","https://openalex.org/W1605828363"],"abstract_inverted_index":{"http://prequips.sourceforge.net":[0]},"counts_by_year":[{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
