{"id":"https://openalex.org/W2111319990","doi":"https://doi.org/10.1093/bioinformatics/btn464","title":"Databases, data tombs and dust in the wind","display_name":"Databases, data tombs and dust in the wind","publication_year":2008,"publication_date":"2008-09-17","ids":{"openalex":"https://openalex.org/W2111319990","doi":"https://doi.org/10.1093/bioinformatics/btn464","mag":"2111319990","pmid":"https://pubmed.ncbi.nlm.nih.gov/18819940"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn464","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn464","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/19/2127/49050212/bioinformatics_24_19_2127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/19/2127/49050212/bioinformatics_24_19_2127.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006115537","display_name":"Jonathan D. Wren","orcid":"https://orcid.org/0000-0003-2776-3545"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I30558944","display_name":"Oklahoma Medical Research Foundation","ror":"https://ror.org/035z6xf33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I30558944"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"Jonathan D. Wren","raw_affiliation_strings":["1 Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, 825 N.E. 13th Street, Oklahoma City, OK 73104-5005, USA and 2Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SA, UK"],"affiliations":[{"raw_affiliation_string":"1 Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, 825 N.E. 13th Street, Oklahoma City, OK 73104-5005, USA and 2Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451","https://openalex.org/I30558944"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059430118","display_name":"Alex Bateman","orcid":null},"institutions":[{"id":"https://openalex.org/I30558944","display_name":"Oklahoma Medical Research Foundation","ror":"https://ror.org/035z6xf33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I30558944"]},{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Alex Bateman","raw_affiliation_strings":["1 Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, 825 N.E. 13th Street, Oklahoma City, OK 73104-5005, USA and 2Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SA, UK"],"affiliations":[{"raw_affiliation_string":"1 Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, 825 N.E. 13th Street, Oklahoma City, OK 73104-5005, USA and 2Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451","https://openalex.org/I30558944"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006115537"],"corresponding_institution_ids":["https://openalex.org/I2802476451","https://openalex.org/I30558944"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.93009367,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.94570558,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"24","issue":"19","first_page":"2127","last_page":"2128"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.785727322101593},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5895735025405884},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.5878065228462219},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5809355974197388},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.5388410091400146},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4754321575164795},{"id":"https://openalex.org/keywords/online-database","display_name":"Online database","score":0.4607575535774231},{"id":"https://openalex.org/keywords/data-administration","display_name":"Data administration","score":0.459844708442688},{"id":"https://openalex.org/keywords/database-design","display_name":"Database design","score":0.2109513282775879},{"id":"https://openalex.org/keywords/database-schema","display_name":"Database schema","score":0.1949763298034668},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13630956411361694},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0888289213180542}],"concepts":[{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.785727322101593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5895735025405884},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.5878065228462219},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5809355974197388},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.5388410091400146},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4754321575164795},{"id":"https://openalex.org/C2777715827","wikidata":"https://www.wikidata.org/wiki/Q7094076","display_name":"Online database","level":2,"score":0.4607575535774231},{"id":"https://openalex.org/C115842085","wikidata":"https://www.wikidata.org/wiki/Q4057846","display_name":"Data administration","level":4,"score":0.459844708442688},{"id":"https://openalex.org/C148840519","wikidata":"https://www.wikidata.org/wiki/Q1049878","display_name":"Database design","level":2,"score":0.2109513282775879},{"id":"https://openalex.org/C30775581","wikidata":"https://www.wikidata.org/wiki/Q632285","display_name":"Database schema","level":3,"score":0.1949763298034668},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13630956411361694},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0888289213180542},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn464","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn464","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/19/2127/49050212/bioinformatics_24_19_2127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18819940","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18819940","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn464","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn464","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/19/2127/49050212/bioinformatics_24_19_2127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111319990.pdf","grobid_xml":"https://content.openalex.org/works/W2111319990.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W2143969914","https://openalex.org/W2170351296","https://openalex.org/W2917064891","https://openalex.org/W4241846879"],"related_works":["https://openalex.org/W2094025093","https://openalex.org/W4251146923","https://openalex.org/W2039387019","https://openalex.org/W2743447767","https://openalex.org/W2998585934","https://openalex.org/W2113503643","https://openalex.org/W4205092877","https://openalex.org/W2123887743","https://openalex.org/W2314629917","https://openalex.org/W1503231262"],"abstract_inverted_index":{"Abstract":[0],"Contact:":[1],"jdwren@gmail.com":[2],"As":[3],"biomedical":[4],"data":[5],"accumulates,":[6],"the":[7,17,82,141,149],"need":[8],"to":[9,192,195],"store,":[10],"share":[11],"and":[12,49,61,134,171,184],"organize":[13],"it":[14,86,112,121],"grows.":[15],"Consequently,":[16],"number":[18],"of":[19,34,58,94,104,148],"Internet-accessible":[20],"databases":[21,75,159,173,202],"has":[22,41],"been":[23],"rapidly":[24],"growing":[25],"on":[26,81],"an":[27,43],"annual":[28,44],"basis.":[29],"Bioinformatics":[30],"regularly":[31],"publishes":[32],"descriptions":[33,96],"biomedically":[35],"relevant":[36],"databases,":[37],"Nucleic":[38],"Acids":[39],"Research":[40],"published":[42],"database":[45,95,106,181],"issue":[46],"since":[47],"1996":[48],"now":[50],"a":[51,98,105,109,114],"new":[52,201],"open-access":[53],"journal,":[54],"Database:":[55],"The":[56],"Journal":[57],"Biological":[59],"Databases":[60],"Curation,":[62],"will":[63,135],"soon":[64],"be":[65,77,136],"launched":[66],"by":[67],"Oxford":[68],"University":[69],"Press":[70],"in":[71,97,108],"2009":[72],"(http://www.oxfordjournals.org/our_journals/databa/).":[73],"Since":[74],"can":[76],"made":[78],"publicly":[79,128],"available":[80,129],"Internet":[83],"without":[84],"publication,":[85,196],"is":[87,122,127],"worth":[88],"considering":[89],"what":[90],"factors":[91],"prioritize":[92],"publication":[93,103],"peer-reviewed":[99],"journal.":[100],"In":[101],"general,":[102],"description":[107],"journal":[110,185],"advertises":[111],"as":[113,152],"valuable":[115,199],"resource":[116,126],"for":[117,132,180],"scientific":[118],"research.":[119],"Implicitly,":[120],"assumed":[123],"that":[124],"this":[125],"(most":[130],"likely":[131],"free)":[133],"maintained.":[137],"However,":[138],"therein":[139],"lies":[140],"problem:":[142],"Database":[143],"papers":[144],"are":[145,164,174,188],"simply":[146,160],"not":[147,167],"same":[150],"nature":[151],"regular":[153],"research":[154],"articles.":[155],"Over":[156],"time,":[157],"some":[158,163,172],"become":[161],"inaccessible,":[162],"created":[165],"but":[166],"maintained":[168],"or":[169],"updated,":[170],"never":[175],"used":[176],"(Galperin,":[177],"2006).":[178],"Thus,":[179],"creators,":[182],"reviewers":[183],"editors,":[186],"there":[187],"several":[189],"additional":[190],"considerations":[191],"judge,":[193],"prior":[194],"how":[197],"potentially":[198],"these":[200],"may":[203],"be.":[204]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
