{"id":"https://openalex.org/W2171228830","doi":"https://doi.org/10.1093/bioinformatics/btn261","title":"OnD-CRF: prediciting order and disorder in proteins conditional random fields","display_name":"OnD-CRF: prediciting order and disorder in proteins conditional random fields","publication_year":2008,"publication_date":"2008-06-27","ids":{"openalex":"https://openalex.org/W2171228830","doi":"https://doi.org/10.1093/bioinformatics/btn261","mag":"2171228830"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn261","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1562/656987/btn261.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1562/656987/btn261.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091125815","display_name":"Lixiao Wang","orcid":"https://orcid.org/0009-0000-8274-4940"},"institutions":[{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Lixiao Wang","raw_affiliation_strings":["Ume\u00e5 Centre for Molecular Pathogenesis, UCMP and Centre for Chemical Biology, KBC, Ume\u00e5 University, SE-901 87 Ume\u00e5, Sweden"],"affiliations":[{"raw_affiliation_string":"Ume\u00e5 Centre for Molecular Pathogenesis, UCMP and Centre for Chemical Biology, KBC, Ume\u00e5 University, SE-901 87 Ume\u00e5, Sweden","institution_ids":["https://openalex.org/I90267481"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041455002","display_name":"Uwe H. Sauer","orcid":"https://orcid.org/0000-0002-3420-439X"},"institutions":[{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Uwe H. Sauer","raw_affiliation_strings":["Ume\u00e5 Centre for Molecular Pathogenesis, UCMP and Centre for Chemical Biology, KBC, Ume\u00e5 University, SE-901 87 Ume\u00e5, Sweden"],"affiliations":[{"raw_affiliation_string":"Ume\u00e5 Centre for Molecular Pathogenesis, UCMP and Centre for Chemical Biology, KBC, Ume\u00e5 University, SE-901 87 Ume\u00e5, Sweden","institution_ids":["https://openalex.org/I90267481"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5091125815"],"corresponding_institution_ids":["https://openalex.org/I90267481"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.8854,"has_fulltext":false,"cited_by_count":55,"citation_normalized_percentile":{"value":0.85579457,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"13","first_page":"1562","last_page":"1562"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.7419870495796204},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5125322341918945},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.4984266757965088},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37482666969299316},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2920267581939697},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22994142770767212}],"concepts":[{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.7419870495796204},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5125322341918945},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.4984266757965088},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37482666969299316},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2920267581939697},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22994142770767212},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn261","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1562/656987/btn261.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3139103","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3139103","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn261","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1562/656987/btn261.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2171228830.pdf","grobid_xml":"https://content.openalex.org/works/W2171228830.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W2004486076","https://openalex.org/W2007794469","https://openalex.org/W2040138444","https://openalex.org/W2057603067","https://openalex.org/W2073745520","https://openalex.org/W2096495474","https://openalex.org/W2101840439","https://openalex.org/W2114604135","https://openalex.org/W2129261098","https://openalex.org/W2147880316"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2356597680","https://openalex.org/W2114846443","https://openalex.org/W2093471820","https://openalex.org/W2559372442","https://openalex.org/W2042364203","https://openalex.org/W2002855582","https://openalex.org/W3191439782","https://openalex.org/W2132688829"],"abstract_inverted_index":{"Motivation:":[0],"Order":[1],"and":[2,21,42,53],"Disorder":[3],"prediction":[4],"using":[5],"Conditional":[6],"Random":[7],"Fields,":[8],"OnD-CRF,":[9],"is":[10],"a":[11],"new":[12],"method":[13],"for":[14],"accurately":[15],"predicting":[16],"the":[17,38,62,67],"transition":[18],"between":[19],"structured":[20],"mobile":[22],"or":[23],"disordered":[24],"regions":[25],"in":[26],"proteins.":[27],"OnD-CRF":[28],"applies":[29],"CRFs":[30],"relying":[31],"on":[32,50],"features":[33],"which":[34],"are":[35],"generated":[36],"from":[37,43],"amino":[39],"acids":[40],"sequence":[41],"secondary":[44],"structure":[45],"prediction.":[46],"Benchmarking":[47],"results":[48],"based":[49],"CASP7":[51],"targets,":[52],"evaluation":[54],"with":[55],"respect":[56],"to":[57],"several":[58],"CASP":[59],"criteria,":[60],"rank":[61],"OnDCRF":[63],"model":[64],"highest":[65],"among":[66],"fully":[68],"automatic":[69],"server":[70],"group.":[71],"Availability:":[72],"http://babel.ucmp.umu.se/ond-crf/":[73]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":6}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
