{"id":"https://openalex.org/W2126804125","doi":"https://doi.org/10.1093/bioinformatics/btn178","title":"Annotation-Modules: a tool for finding significant combinations of multisource annotations for gene lists","display_name":"Annotation-Modules: a tool for finding significant combinations of multisource annotations for gene lists","publication_year":2008,"publication_date":"2008-04-23","ids":{"openalex":"https://openalex.org/W2126804125","doi":"https://doi.org/10.1093/bioinformatics/btn178","mag":"2126804125","pmid":"https://pubmed.ncbi.nlm.nih.gov/18434345"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn178","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn178","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084745527","display_name":"Michael Hackenberg","orcid":"https://orcid.org/0000-0003-2248-3114"},"institutions":[{"id":"https://openalex.org/I4210112728","display_name":"CIC bioGUNE","ror":"https://ror.org/02x5c5y60","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210112728"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Michael Hackenberg","raw_affiliation_strings":["Bioinformatics Group, CIC bioGUNE, CIBER-HEPAD, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, CIC bioGUNE, CIBER-HEPAD, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","institution_ids":["https://openalex.org/I4210112728","https://openalex.org/I4210115082"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059654999","display_name":"Rune Matthiesen","orcid":"https://orcid.org/0000-0002-6353-2616"},"institutions":[{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210112728","display_name":"CIC bioGUNE","ror":"https://ror.org/02x5c5y60","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210112728"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rune Matthiesen","raw_affiliation_strings":["Bioinformatics Group, CIC bioGUNE, CIBER-HEPAD, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, CIC bioGUNE, CIBER-HEPAD, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","institution_ids":["https://openalex.org/I4210112728","https://openalex.org/I4210115082"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5084745527"],"corresponding_institution_ids":["https://openalex.org/I4210112728","https://openalex.org/I4210115082"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4814,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.81624734,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"24","issue":"11","first_page":"1386","last_page":"1393"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.9124878644943237},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.6812773942947388},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6071910858154297},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.46786239743232727},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44734665751457214},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.42319613695144653},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.41897106170654297},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41826942563056946},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.41297513246536255},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31467604637145996},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2942013144493103},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.28960102796554565},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.19092267751693726},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15424606204032898},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14310815930366516}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.9124878644943237},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.6812773942947388},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6071910858154297},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.46786239743232727},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44734665751457214},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.42319613695144653},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.41897106170654297},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41826942563056946},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.41297513246536255},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31467604637145996},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2942013144493103},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.28960102796554565},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.19092267751693726},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15424606204032898},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14310815930366516},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn178","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn178","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18434345","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18434345","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":62,"referenced_works":["https://openalex.org/W1532476473","https://openalex.org/W1535641839","https://openalex.org/W1633265983","https://openalex.org/W1970156673","https://openalex.org/W1974285587","https://openalex.org/W1977706798","https://openalex.org/W1991597167","https://openalex.org/W1993153599","https://openalex.org/W1997144871","https://openalex.org/W1998902445","https://openalex.org/W2001444915","https://openalex.org/W2002584605","https://openalex.org/W2004146038","https://openalex.org/W2019234246","https://openalex.org/W2027873015","https://openalex.org/W2040191060","https://openalex.org/W2050249780","https://openalex.org/W2050869737","https://openalex.org/W2061636126","https://openalex.org/W2061891352","https://openalex.org/W2069833151","https://openalex.org/W2079056345","https://openalex.org/W2080509529","https://openalex.org/W2096790064","https://openalex.org/W2101259235","https://openalex.org/W2103017472","https://openalex.org/W2104488717","https://openalex.org/W2106680700","https://openalex.org/W2107268689","https://openalex.org/W2112192177","https://openalex.org/W2116993454","https://openalex.org/W2122683221","https://openalex.org/W2124244625","https://openalex.org/W2124388496","https://openalex.org/W2124954099","https://openalex.org/W2135030836","https://openalex.org/W2135230352","https://openalex.org/W2136707328","https://openalex.org/W2137505881","https://openalex.org/W2138664009","https://openalex.org/W2139703939","https://openalex.org/W2140628921","https://openalex.org/W2143658931","https://openalex.org/W2145025818","https://openalex.org/W2145191876","https://openalex.org/W2146975493","https://openalex.org/W2147049379","https://openalex.org/W2150162153","https://openalex.org/W2152274187","https://openalex.org/W2152960199","https://openalex.org/W2153007310","https://openalex.org/W2159482845","https://openalex.org/W2160710283","https://openalex.org/W2160927022","https://openalex.org/W2161062388","https://openalex.org/W2161399316","https://openalex.org/W2164683872","https://openalex.org/W2164687768","https://openalex.org/W2166898290","https://openalex.org/W2305556493","https://openalex.org/W2799805796","https://openalex.org/W4211231408"],"related_works":["https://openalex.org/W1976142521","https://openalex.org/W2785632727","https://openalex.org/W2011022979","https://openalex.org/W2802295160","https://openalex.org/W4309908782","https://openalex.org/W2165463056","https://openalex.org/W2095471526","https://openalex.org/W1966852334","https://openalex.org/W1972257067","https://openalex.org/W2126804125"],"abstract_inverted_index":{"http://web.bioinformatics.cicbiogune.es/AM/AnnotationModules.php":[0]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
