{"id":"https://openalex.org/W2142749069","doi":"https://doi.org/10.1093/bioinformatics/btm641","title":"Structural search and retrieval using a tableau representation of protein folding patterns","display_name":"Structural search and retrieval using a tableau representation of protein folding patterns","publication_year":2008,"publication_date":"2008-01-05","ids":{"openalex":"https://openalex.org/W2142749069","doi":"https://doi.org/10.1093/bioinformatics/btm641","mag":"2142749069","pmid":"https://pubmed.ncbi.nlm.nih.gov/18175768"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm641","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm641","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/5/645/49052779/bioinformatics_24_5_645.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/5/645/49052779/bioinformatics_24_5_645.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081792355","display_name":"Arun S. Konagurthu","orcid":"https://orcid.org/0000-0002-1610-8329"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"Arun S. Konagurthu","raw_affiliation_strings":["1 Department of Biochemistry and Molecular Biology and The Huck Institute for Genomics, Proteomics and Bioinformatics, The Pennsylvania State University, University Park, PA 16802, USA, 2Department of Computer Science and Software Engineering and 3NICTA Victoria Laboratories, The University of Melbourne, Victoria 3010, Australia"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry and Molecular Biology and The Huck Institute for Genomics, Proteomics and Bioinformatics, The Pennsylvania State University, University Park, PA 16802, USA, 2Department of Computer Science and Software Engineering and 3NICTA Victoria Laboratories, The University of Melbourne, Victoria 3010, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064839018","display_name":"Peter J. Stuckey","orcid":"https://orcid.org/0000-0003-2186-0459"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Peter J. Stuckey","raw_affiliation_strings":["1 Department of Biochemistry and Molecular Biology and The Huck Institute for Genomics, Proteomics and Bioinformatics, The Pennsylvania State University, University Park, PA 16802, USA, 2Department of Computer Science and Software Engineering and 3NICTA Victoria Laboratories, The University of Melbourne, Victoria 3010, Australia"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry and Molecular Biology and The Huck Institute for Genomics, Proteomics and Bioinformatics, The Pennsylvania State University, University Park, PA 16802, USA, 2Department of Computer Science and Software Engineering and 3NICTA Victoria Laboratories, The University of Melbourne, Victoria 3010, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057325979","display_name":"Arthur M. Lesk","orcid":"https://orcid.org/0000-0002-2596-0601"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Arthur M. Lesk","raw_affiliation_strings":["1 Department of Biochemistry and Molecular Biology and The Huck Institute for Genomics, Proteomics and Bioinformatics, The Pennsylvania State University, University Park, PA 16802, USA, 2Department of Computer Science and Software Engineering and 3NICTA Victoria Laboratories, The University of Melbourne, Victoria 3010, Australia"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry and Molecular Biology and The Huck Institute for Genomics, Proteomics and Bioinformatics, The Pennsylvania State University, University Park, PA 16802, USA, 2Department of Computer Science and Software Engineering and 3NICTA Victoria Laboratories, The University of Melbourne, Victoria 3010, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081792355"],"corresponding_institution_ids":["https://openalex.org/I130769515","https://openalex.org/I165779595"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7978,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.84698675,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"24","issue":"5","first_page":"645","last_page":"651"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9679999947547913,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7279590368270874},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.6290037631988525},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5844356417655945},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.48952898383140564},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4173157811164856},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4054614007472992},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3771841824054718},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3250395655632019},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13122138381004333}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7279590368270874},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.6290037631988525},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5844356417655945},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.48952898383140564},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4173157811164856},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4054614007472992},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3771841824054718},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3250395655632019},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13122138381004333},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btm641","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm641","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/5/645/49052779/bioinformatics_24_5_645.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18175768","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18175768","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.329.8742","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.329.8742","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2008/01/05/bioinformatics.btm641.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.563.248","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.563.248","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.bx.psu.edu/~arun/BIOINF-2007-1836.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm641","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm641","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/5/645/49052779/bioinformatics_24_5_645.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142749069.pdf","grobid_xml":"https://content.openalex.org/works/W2142749069.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1972148314","https://openalex.org/W1972222351","https://openalex.org/W1981681460","https://openalex.org/W1991252389","https://openalex.org/W1993273781","https://openalex.org/W2008708467","https://openalex.org/W2017065315","https://openalex.org/W2021115755","https://openalex.org/W2022058405","https://openalex.org/W2024519892","https://openalex.org/W2031901496","https://openalex.org/W2042661033","https://openalex.org/W2047544230","https://openalex.org/W2050330741","https://openalex.org/W2053913299","https://openalex.org/W2071818582","https://openalex.org/W2074231493","https://openalex.org/W2077235131","https://openalex.org/W2087532171","https://openalex.org/W2097108043","https://openalex.org/W2108067237","https://openalex.org/W2112084742","https://openalex.org/W2117077088","https://openalex.org/W2132653593","https://openalex.org/W2133657429","https://openalex.org/W2152326664","https://openalex.org/W2341171179","https://openalex.org/W3145042860","https://openalex.org/W4235848672","https://openalex.org/W6679995702"],"related_works":["https://openalex.org/W2260493136","https://openalex.org/W2113188411","https://openalex.org/W4210423528","https://openalex.org/W2976965029","https://openalex.org/W2023600921","https://openalex.org/W2382178265","https://openalex.org/W2055827177","https://openalex.org/W2072666835","https://openalex.org/W4248706500","https://openalex.org/W2939859775"],"abstract_inverted_index":{"A":[0],"web":[1],"server":[2],"implementing":[3],"the":[4],"TableauSearch":[5],"is":[6],"available":[7],"from":[8],"http://hollywood.bx.psu.edu/TabSearch.":[9]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
